Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003000 (gltD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003000 showshow history
Names
gltD ECDH10B_3388
Product
glutamate synthase, 4Fe-4S protein, small subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3454965 3456383 1419 473
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000759 (IPR000759 (DEPRECATED) Adrenodoxin reductase) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Automated Process Approved IPR000103 (IPR000103 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, class-II) Jul 2009
Automated Process Approved IPR006006 (IPR006006 Glutamate synthase NADPH small chain-like) Jul 2009
Automated Process Approved IPR012285 (IPR012285 (DEPRECATED) Fumarate reductase, C-terminal) Jul 2009
Automated Process Approved IPR009051 (IPR009051 Alpha-helical ferredoxin) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000103
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gltD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010547
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3388 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutamate synthase, 4Fe-4S protein, small subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000103 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, class-II Protein Sequence Similarity - InterPro Domain: IPR000103
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009051 Alpha-helical ferredoxin Protein Sequence Similarity - InterPro Domain: IPR009051
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012285 (DEPRECATED) Fumarate reductase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012285
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006006 Glutamate synthase NADPH small chain-like Protein Sequence Similarity - InterPro Domain: IPR006006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000759 (DEPRECATED) Adrenodoxin reductase Protein Sequence Similarity - InterPro Domain: IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010547 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010547
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006537 glutamate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000103
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006006
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012285
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000016 ygfT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000019 aegA CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010547 gltD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3449965 to 3461383
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002999gltBCDSforward34504923454952Upstream
AEC-0003000gltDCDSforward34549653456383Matches
AEC-0003001gltFCDSforward34569433457707Downstream
AEC-0003002yhcACDSforward34578793458553Downstream
AEC-0003003yhcDCDSforward34585743460955Downstream
AEC-0003004yhcE_1CDSpforward34609523461431Downstream
AEC-0004533yhcEpseudogeneforward34609523461322(Interval #1) Downstream
AEC-0000048IS5.13repeat_regioncomplement34613233462517Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948