Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003011 (nanA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003011 showshow history
Names
nanA ECDH10B_3402
Product
N-acetylneuraminate lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3468450 3469343 894 298
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005264 (IPR005264 N-acetylneuraminate lyase) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Automated Process Approved IPR002220 (IPR002220 DapA-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008747 N-acetylneuraminate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nanA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010579
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3402 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product N-acetylneuraminate lyase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005264 N-acetylneuraminate lyase Protein Sequence Similarity - InterPro Domain: IPR005264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002220 DapA-like Protein Sequence Similarity - InterPro Domain: IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010579 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010579
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008747 N-acetylneuraminate lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005264
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002310 nanA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002507 nanA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002217 nanA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008474 nanA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003340 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007877 nanA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003283 nanA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005890 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008808 nanA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008556 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080153 nanA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008887 nanA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009199 nanA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003726 nanA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008139 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002279 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007882 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006397 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007929 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009734 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009378 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009843 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007187 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006166 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008525 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009315 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008647 nanA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006416 nanA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028253 nanA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009730 nanA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008101 nanA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010579 nanA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003297 nanA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003569 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003518 nanA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134162 nanA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006070 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003664 nanA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007697 nanA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004485 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003828 nanA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007950 nanA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010359 nanA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009803 nanA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007111 nanA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0007996 nanA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006915 nanA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008425 nanA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006382 nanA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007093 nanA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007959 nanA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005107 nanA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003240 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003206 nanA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004180 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008120 nanA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009038 nanA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007603 nanA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007274 nanA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112445 nanA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084976 nanA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100361 nanA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005889 nanA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005970 nanA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008589 nanA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003463 nanA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008967 nanA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007301 nanA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003865 nanA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074678 nanA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089498 nanA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003458 nanA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003674 nanA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3463450 to 3474343
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003007yhcHCDScomplement34647813465245Downstream
AEC-0003008nanKCDScomplement34652423466117Downstream
AEC-0003009nanECDScomplement34661143466803Downstream
AEC-0003010nanTCDScomplement34668513468341Downstream
AEC-0003011nanACDScomplement34684503469343Matches
AEC-0003012nanRCDScomplement34694653470256Upstream
AEC-0003013dcuDCDSforward34706363472003Upstream
AEC-0003014sspBCDScomplement34720463472543Upstream
AEC-0003015sspACDScomplement34725493473187Upstream
AEC-0003016rpsICDScomplement34735823473974Upstream
AEC-0003017rplMCDScomplement34739903474418Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948