Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003022 (mdh) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003022 showshow history
Names
mdh ECDH10B_3413
Product
malate dehydrogenase, NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3479097 3480035 939 313
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010097 (IPR010097 Malate dehydrogenase, type 1) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR015955 (IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal) Jul 2009
Automated Process Approved IPR001252 (IPR001252 Malate dehydrogenase, active site) Jul 2009
Automated Process Approved IPR001236 (IPR001236 Lactate/malate dehydrogenase, N-terminal) Jul 2009
Automated Process Approved IPR001557 (IPR001557 L-lactate/malate dehydrogenase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006108 malate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010097
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044262 cellular carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001557
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001557
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015955
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001236
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001557
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016615 malate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001252
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030060 L-malate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010097
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mdh Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010613
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3413 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product malate dehydrogenase, NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015955
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010097 Malate dehydrogenase, type 1 Protein Sequence Similarity - InterPro Domain: IPR010097
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001252 Malate dehydrogenase, active site Protein Sequence Similarity - InterPro Domain: IPR001252
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001236 Lactate/malate dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001236
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001557 L-lactate/malate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR001557
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010613 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010613
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015955
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006108 malate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010097
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044262 cellular carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001557
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001557
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001557
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030060 L-malate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010097
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016615 malate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001252
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001236
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000984 mdh CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000813 mdh CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019899 mdh CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000331 mdh CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002207 mdh CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008463 mdh CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003351 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007866 mdh CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003293 mdh CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005877 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008819 mdh CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008545 mdh pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080165 mdh CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008876 mdh CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009210 mdh CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003736 mdh CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008151 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002291 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007893 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006408 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007940 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010269 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009389 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010195 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007198 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006177 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008536 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009326 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008659 mdh CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006427 mdh CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028264 mdh CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009073 mdh_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008112 mdh CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010613 mdh CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003308 mdh CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003580 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003530 mdh CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134173 mdh CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006082 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003676 mdh CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060913 mdh CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002818 mdh CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001356 mdh CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007717 mdh CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004473 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003849 mdh CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007970 mdh CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010427 mdh CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009867 mdh CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007091 mdh CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008016 mdh CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008605 mdh CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008405 mdh CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008213 mdh CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007113 mdh CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007979 mdh CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005087 mdh CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003259 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003225 mdh CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004202 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008140 mdh CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008045 mdh CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007622 mdh CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008536 mdh CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112487 mdh CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084994 mdh CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100415 mdh CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005869 mdh CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008877 mdh CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008043 mdh CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003452 mdh CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008956 mdh CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007804 mdh CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003878 mdh CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074692 mdh CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089513 mdh CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003472 mdh CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003687 mdh CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000983 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001293 mdh CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002117 mdh CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002567 mdh CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001837 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235498 mdh CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008095 mdh CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000082 mdh CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008074 mdh CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003694 mdh CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127177 mdh CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007847 mdh CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008544 mdh CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001309 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006807 mdh CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004100 mdh CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030298 mdh CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006503 mdh CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003919 mdh CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004283 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007463 mdh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007639 mdh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000495 mdh CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000579 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004460 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3474097 to 3485035
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003017rplMCDScomplement34739903474418Downstream
AEC-0003018yhcMCDScomplement34746373475764Downstream
AEC-0003019yhcBCDSforward34759583476356Downstream
AEC-0003020degQCDSforward34765103477877Downstream
AEC-0003021degSCDSforward34779673479034Downstream
AEC-0003022mdhCDScomplement34790973480035Matches
AEC-0003023argRCDSforward34804703480940Upstream
AEC-0003024yhcNCDSforward34813053481568Upstream
AEC-0003025yhcOCDScomplement34816243481896Upstream
AEC-0003026aaeACDScomplement34839613484893Upstream
AEC-0003027aaeXCDScomplement34849013485104Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948