Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003036 (accB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003036 showshow history
Names
accB ECDH10B_3430
Product
acetyl CoA carboxylase, BCCP subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3501203 3501673 471 157
Sequence

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Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001249 (IPR001249 Acetyl-CoA biotin carboxyl carrier) Jul 2009
Automated Process Approved IPR001882 (IPR001882 Biotin-binding site) Jul 2009
Automated Process Approved IPR000089 (IPR000089 Biotin/lipoyl attachment) Jul 2009
Automated Process Approved IPR011053 (IPR011053 Single hybrid motif) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009317 acetyl-CoA carboxylase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009374 biotin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001882
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003989 acetyl-CoA carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name accB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010675
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3430 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product acetyl CoA carboxylase, BCCP subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001249 Acetyl-CoA biotin carboxyl carrier Protein Sequence Similarity - InterPro Domain: IPR001249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001882 Biotin-binding site Protein Sequence Similarity - InterPro Domain: IPR001882
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000089 Biotin/lipoyl attachment Protein Sequence Similarity - InterPro Domain: IPR000089
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011053 Single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011053
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010675 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010675
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006633 fatty acid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009317 acetyl-CoA carboxylase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009374 biotin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001882
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003989 acetyl-CoA carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001143 accB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000653 accB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020596 accB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000311 accB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002183 accB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009641 accB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003372 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007847 accB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003310 accB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005853 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080185 accB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010734 accB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003755 accB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008171 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007912 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006427 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010680 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009408 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010722 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007219 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010848 accB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008556 accB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006446 accB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028283 accB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009054 accB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008134 accB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010675 accB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003325 accB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003601 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003548 accB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134191 accB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006104 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003697 accB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060479 accB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000194 accB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000089 accB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000024 accB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007737 accB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004453 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003870 accB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007990 accB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010492 accB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009928 accB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007071 accB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008036 accB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008788 accB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008385 accB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008233 accB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007133 accB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0007999 accB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005067 accB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003279 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003245 accB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004227 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008160 accB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008025 accB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007642 accB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008556 accB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112520 accB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085014 accB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100480 accB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005849 accB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008857 accB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008063 accB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003431 accB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008701 accB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003898 accB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074712 accB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089530 accB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003489 accB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003705 accB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000924 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010938 accB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002790 accB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001437 accB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002292 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243616 accB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005312 accB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004380 accB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008286 accB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003803 accB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127607 accB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007729 accB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007909 accB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002863 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006688 accB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006775 accB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029797 accB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006383 accB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004222 accB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000308 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008298 accB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004331 accB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003683 accB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004481 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000531 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3496203 to 3506673
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003033mreBCDScomplement34958113496854Upstream
AEC-0003034yhdACDScomplement34971593499099Upstream
AEC-0003035yhdHCDSforward34992513500225Upstream
AEC-0003036accBCDSforward35012033501673Matches
AEC-0003037accCCDSforward35016843503033Downstream
AEC-0003038yhdTCDSforward35031423503384Downstream
AEC-0003039panFCDSforward35033743504825Downstream
AEC-0003040prmACDSforward35048373505718Downstream
AEC-0003041dusBCDSforward35060473507012Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948