Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003037 (accC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003037 showshow history
Names
accC ECDH10B_3431
Product
acetyl-CoA carboxylase, biotin carboxylase subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3501684 3503033 1350 450
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004549 (IPR004549 Acetyl-CoA carboxylase, biotin carboxylase) Jul 2009
Automated Process Approved IPR013817 (IPR013817 (DEPRECATED) Pre-ATP-grasp fold) Jul 2009
Automated Process Approved IPR013816 (IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2) Jul 2009
Automated Process Approved IPR005479 (IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain) Jul 2009
Automated Process Approved IPR005481 (IPR005481 Biotin carboxylase-like, N-terminal domain) Jul 2009
Automated Process Approved IPR005482 (IPR005482 Biotin carboxylase, C-terminal) Jul 2009
Automated Process Approved IPR016185 (IPR016185 Pre-ATP-grasp domain superfamily) Jul 2009
Automated Process Approved IPR011054 (IPR011054 Rudiment single hybrid motif) Jul 2009
Automated Process Approved IPR011761 (IPR011761 ATP-grasp fold) Jul 2009
Automated Process Approved IPR011764 (IPR011764 Biotin carboxylation domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005479
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009374 biotin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004549
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name accC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010677
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3431 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product acetyl-CoA carboxylase, biotin carboxylase subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005482 Biotin carboxylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005482
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005481 Biotin carboxylase-like, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR005481
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Protein Sequence Similarity - InterPro Domain: IPR005479
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR013816
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011761 ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011054 Rudiment single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011054
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016185 Pre-ATP-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016185
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011764 Biotin carboxylation domain Protein Sequence Similarity - InterPro Domain: IPR011764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004549 Acetyl-CoA carboxylase, biotin carboxylase Protein Sequence Similarity - InterPro Domain: IPR004549
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013817 (DEPRECATED) Pre-ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010677 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010677
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005479
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004549
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009374 biotin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011764
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000832 accC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000376 accC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017046 accC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000310 accC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002182 accC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009640 accC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003373 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007846 accC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003311 accC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005852 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080186 accC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010940 accC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003756 accC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008172 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001035 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007913 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006428 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010329 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010681 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009409 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007220 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010849 accC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008557 accC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028284 accC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009053 accC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008135 accC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010677 accC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003326 accC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003602 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003549 accC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134192 accC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006105 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003698 accC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060478 accC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000195 accC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000088 accC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000023 accC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007738 accC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004452 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003871 accC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007991 accC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010495 accC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009931 accC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007070 accC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008037 accC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008787 accC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008384 accC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008234 accC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007134 accC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008000 accC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005066 accC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003280 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003246 accC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004228 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008161 accC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008024 accC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007643 accC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008557 accC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112523 accC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085015 accC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100483 accC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005848 accC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008856 accC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008064 accC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003430 accC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008702 accC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008573 accC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003899 accC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074713 accC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089531 accC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003490 accC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003706 accC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000925 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010941 accC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002791 accC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001438 accC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002293 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243618 accC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005313 accC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004379 accC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008285 accC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003804 accC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127603 accC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007728 accC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007908 accC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002862 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006687 accC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006774 accC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029798 accC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006382 accC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004223 accC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000307 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008297 accC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004330 accC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003684 accC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004482 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000530 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3496684 to 3508033
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003033mreBCDScomplement34958113496854Upstream
AEC-0003034yhdACDScomplement34971593499099Upstream
AEC-0003035yhdHCDSforward34992513500225Upstream
AEC-0003036accBCDSforward35012033501673Upstream
AEC-0003037accCCDSforward35016843503033Matches
AEC-0003038yhdTCDSforward35031423503384Downstream
AEC-0003039panFCDSforward35033743504825Downstream
AEC-0003040prmACDSforward35048373505718Downstream
AEC-0003041dusBCDSforward35060473507012Downstream
AEC-0003042fisCDSforward35070383507334Downstream
AEC-0003043yhdJCDSforward35074203508304Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948