Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003039 (panF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003039 showshow history
Names
panF ECDH10B_3433
Product
pantothenate:sodium symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3503374 3504825 1452 484
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011849 (IPR011849 Sodium/pantothenate symporter) Jul 2009
Automated Process Approved IPR001734 (IPR001734 Sodium/solute symporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0015887 pantothenate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015233 pantothenate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015081 sodium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name panF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010695
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3433 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product pantothenate:sodium symporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011849 Sodium/pantothenate symporter Protein Sequence Similarity - InterPro Domain: IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001734 Sodium/solute symporter Protein Sequence Similarity - InterPro Domain: IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010695 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010695
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015887 pantothenate transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015233 pantothenate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015081 sodium ion transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0031402 sodium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001734
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001800 panF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001425 panF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017043 panF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000308 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002180 panF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003383 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007844 panF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003322 panF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005850 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009700 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080197 panF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010313 panF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003758 panF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008174 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001037 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007915 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006430 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010331 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010683 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009411 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010851 panF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008559 panF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006449 panF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028286 panF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009042 panF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008137 panF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010695 panF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003328 panF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003604 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003551 panF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134194 panF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0006107 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003709 panF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060477 panF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000172 panF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002370 panF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000014 panF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007740 panF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004449 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003873 panF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0007993 panF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010504 panF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0009940 panF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007068 panF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008039 panF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008785 panF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008382 panF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008236 panF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007136 panF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008002 panF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005064 panF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003282 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003248 panF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004230 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008163 panF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008022 panF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007645 panF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008559 panF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112528 panF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085017 panF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100489 panF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005846 panF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008854 panF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008066 panF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003556 panF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009059 panF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003901 panF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074715 panF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089533 panF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003492 panF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003708 panF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000927 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0010949 panF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002793 panF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001440 panF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002295 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243622 panF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005317 panF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004377 panF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008281 panF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003806 panF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0127583 panF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007724 panF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007904 panF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002861 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006683 panF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006770 panF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029800 panF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006378 panF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004225 panF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000305 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008294 panF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004328 panF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003686 panF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004486 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000526 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3498374 to 3509825
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003034yhdACDScomplement34971593499099Upstream
AEC-0003035yhdHCDSforward34992513500225Upstream
AEC-0003036accBCDSforward35012033501673Upstream
AEC-0003037accCCDSforward35016843503033Upstream
AEC-0003038yhdTCDSforward35031423503384Overlaps Upstream
AEC-0003039panFCDSforward35033743504825Matches
AEC-0003040prmACDSforward35048373505718Downstream
AEC-0003041dusBCDSforward35060473507012Downstream
AEC-0003042fisCDSforward35070383507334Downstream
AEC-0003043yhdJCDSforward35074203508304Downstream
AEC-0003044yhdUCDSforward35083883508567Downstream
AEC-0003045envRCDScomplement35085703509232Downstream
AEC-0003046acrECDSforward35096313510788Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948