Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003055 (aroE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003055 showshow history
Names
aroE ECDH10B_3456
Product
dehydroshikimate reductase, NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3525787 3526605 819 273
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011342 (IPR011342 Shikimate dehydrogenase) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR013708 (IPR013708 Shikimate dehydrogenase substrate binding, N-terminal) Jul 2009
Automated Process Approved IPR006151 (IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aroE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010763
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3456 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dehydroshikimate reductase, NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011342 Shikimate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR011342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Protein Sequence Similarity - InterPro Domain: IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013708 Shikimate dehydrogenase substrate binding, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013708
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010763 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010763
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006151
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050661 NADP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004764 shikimate 3-dehydrogenase (NADP+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011342
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000259 aroE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000316 aroE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016936 aroE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003232 aroE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002118 aroE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009391 aroE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003407 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007819 aroE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003337 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005823 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010156 aroE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009874 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080218 aroE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010349 aroE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010518 aroE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003780 aroE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008198 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003668 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007943 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006457 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010360 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010389 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009438 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010428 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007251 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010419 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008588 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010613 aroE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006475 aroE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028311 aroE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009796 aroE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008162 aroE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010763 aroE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004089 aroE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003627 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003574 aroE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134219 aroE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004613 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003735 aroE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064319 aroE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002323 aroE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001043 aroE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001510 aroE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007764 aroE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004423 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003909 aroE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008017 aroE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010559 aroE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012379 aroE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009020 aroE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008063 aroE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008797 aroE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008560 aroE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008691 aroE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007160 aroE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008025 aroE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009237 aroE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003301 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003267 aroE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004260 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008186 aroE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009209 aroE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007667 aroE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008906 aroE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114302 aroE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085829 aroE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100531 aroE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005822 aroE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009362 aroE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009213 aroE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003579 aroE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009084 aroE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008047 aroE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003926 aroE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074740 aroE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089550 aroE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003512 aroE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003733 aroE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002427 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011175 aroE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001012 aroE_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002002 aroE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001068 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234746 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004728 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003861 aroE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007294 aroE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003059 aroE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116128 aroE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006843 aroE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008178 aroE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001973 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005533 aroE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006904 aroE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033825 aroE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004889 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004590 aroE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000192 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004555 aroE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007912 aroE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003778 aroE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004589 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000375 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3520787 to 3531605
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004226rrlDrRNAcomplement35196473522550Downstream
AEC-0004169alaUtRNAcomplement35227253522800Downstream
AEC-0004170ileUtRNAcomplement35228433522919Downstream
AEC-0004227rrsDrRNAcomplement35229883524529Downstream
AEC-0003053yrdACDSforward35250033525557Downstream
AEC-0003054yrdBCDScomplement35255333525790Overlaps Downstream
AEC-0003055aroECDScomplement35257873526605Matches
AEC-0003056yrdCCDScomplement35266103527182Upstream
AEC-0003057yrdDCDScomplement35271873527729Upstream
AEC-0003058smgCDScomplement35277583528231Upstream
AEC-0004028smfCDScomplement35282033529327Upstream
AEC-0003059defCDSforward35294573529966Upstream
AEC-0003060fmtCDSforward35299813530928Upstream
AEC-0003061rsmBCDSforward35309743532263Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948