Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003060 (fmt) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003060 showshow history
Names
fmt ECDH10B_3462
Product
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3529981 3530928 948 316
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005794 (IPR005794 Methionyl-tRNA formyltransferase) Jul 2009
Automated Process Approved IPR002376 (IPR002376 Formyl transferase, N-terminal) Jul 2009
Automated Process Approved IPR005793 (IPR005793 Formyl transferase, C-terminal) Jul 2009
Automated Process Approved IPR015518 (IPR015518 (DEPRECATED) Methionine tRNA Formyltransferase-like) Jul 2009
Automated Process Approved IPR001555 (IPR001555 Phosphoribosylglycinamide formyltransferase, active site) Jul 2009
Automated Process Approved IPR011034 (IPR011034 Formyl transferase-like, C-terminal domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005794
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011034
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004479 methionyl-tRNA formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005794
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fmt Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010781
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3462 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002376 Formyl transferase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005794 Methionyl-tRNA formyltransferase Protein Sequence Similarity - InterPro Domain: IPR005794
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005793 Formyl transferase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR005793
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015518 (DEPRECATED) Methionine tRNA Formyltransferase-like Protein Sequence Similarity - InterPro Domain: IPR015518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011034 Formyl transferase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011034
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001555 Phosphoribosylglycinamide formyltransferase, active site Protein Sequence Similarity - InterPro Domain: IPR001555
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010781 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010781
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005794
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016742 hydroxymethyl-, formyl- and related transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002376
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008168 methyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001555
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011034
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004479 methionyl-tRNA formyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005794
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000201 fmt CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000269 fmt CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016929 fmt CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003238 fmt CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002113 fmt CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009397 fmt CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003413 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007813 fmt CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003343 fmt CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005817 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010162 fmt CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009868 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080224 fmt CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010344 fmt CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010512 fmt CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003786 fmt CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008204 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003674 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0007949 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006463 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010366 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010383 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009444 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010422 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007257 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010425 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008594 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010545 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010436 fmt CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006481 fmt CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028317 fmt CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009791 fmt CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008168 fmt CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010781 fmt CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004083 fmt CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003633 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003580 fmt CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134225 fmt CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004607 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003741 fmt CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064324 fmt CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002326 fmt CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002205 fmt CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001516 fmt CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007770 fmt CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004417 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003915 fmt CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008023 fmt CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010576 fmt CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012362 fmt CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009014 fmt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008069 fmt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008803 fmt CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008554 fmt CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008697 fmt CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007166 fmt CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008031 fmt CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009231 fmt CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003307 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003273 fmt CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004266 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008192 fmt CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0009215 fmt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007673 fmt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008900 fmt CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114287 fmt CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085823 fmt CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100549 fmt CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005816 fmt CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009356 fmt CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0009219 fmt CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003585 fmt CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009090 fmt CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008042 fmt CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003932 fmt CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0074746 fmt CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089556 fmt CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003517 fmt CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003739 fmt CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002433 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011191 fmt CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001018 fmt CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001996 fmt CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001062 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234739 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004720 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003867 fmt CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007300 fmt CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003065 fmt CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116115 fmt CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006849 fmt CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008184 fmt CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001969 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005527 fmt CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006898 fmt CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033819 fmt CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004895 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004596 fmt CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000186 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004549 fmt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007918 fmt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003784 fmt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004595 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000369 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3524981 to 3535928
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003053yrdACDSforward35250033525557Upstream
AEC-0003054yrdBCDScomplement35255333525790Upstream
AEC-0003055aroECDScomplement35257873526605Upstream
AEC-0003056yrdCCDScomplement35266103527182Upstream
AEC-0003057yrdDCDScomplement35271873527729Upstream
AEC-0003058smgCDScomplement35277583528231Upstream
AEC-0004028smfCDScomplement35282033529327Upstream
AEC-0003059defCDSforward35294573529966Upstream
AEC-0003060fmtCDSforward35299813530928Matches
AEC-0003061rsmBCDSforward35309743532263Downstream
AEC-0003062mscLCDSforward35337913534201Downstream
AEC-0004091yhdLCDScomplement35341983534416Downstream
AEC-0003063zntRCDScomplement35344723534897Downstream
AEC-0003064yhdNCDScomplement35349083535276Downstream
AEC-0003065rplQCDScomplement35353833535766Downstream
AEC-0003066rpoACDScomplement35358073536796Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948