Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003127 (argD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003127 showshow history
Names
argD ECDH10B_3535
Product
bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3584727 3585947 1221 407
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR017652 (IPR017652 Acetyl/Succinylornithine transaminase family, bacteria) Jul 2009
Automated Process Approved IPR004636 (IPR004636 Acetylornithine/Succinylornithine transaminase family) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name argD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010976
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3535 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR017652 Acetyl/Succinylornithine transaminase family, bacteria Protein Sequence Similarity - InterPro Domain: IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004636 Acetylornithine/Succinylornithine transaminase family Protein Sequence Similarity - InterPro Domain: IPR004636
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010976 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010976
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017652
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000779 argD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001022 argD CDS
Ortholog
Automated Process Approved Go view Dickeya dadantii 3937 ABF-0015484 argD CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003301 argD CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0002053 argD CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0008823 argD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003488 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0007737 argD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003412 argD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0005734 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0006374 argD CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0008797 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080310 argD CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0007129 argD CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0005395 argD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0003846 argD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008263 argD CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0004622 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0008009 argD CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0006522 argD CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0006068 argD CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0009932 argD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0009503 argD CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0005440 argD CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0007318 argD CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0005101 argD CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0005170 argD CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0005013 argD CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0004894 argD CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0005496 argD CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028377 argD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006580 argD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008244 argD CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0010976 argD CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0004010 argD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0003692 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0003638 argD CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134282 argD CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0002552 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003871 argD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003793 argD CDS
Automated Process Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0064390 argD CDS
Automated Process Approved Go view Pectobacterium brasiliensis 1692 AED-0002410 argD CDS
Automated Process Approved Go view Pectobacterium carotovorum WPP14 ADT-0001091 argD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001506 argD CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137667 argD CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0007832 CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0004340 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0003977 argD CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0008085 CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0010786 argD CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0012160 argD CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0005410 CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0008131 CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0005481 CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0006308 CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0006985 CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0007228 CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0008094 CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0006759 CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0003367 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003333 argD CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0004333 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0008253 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0004739 CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0007734 CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0004539 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0114117 argD CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0085763 argD CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100727 argD CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0005754 CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0005179 CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0008617 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003650 argD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0009154 argD CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0007510 argD CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0003989 argD CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0075699 argD CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089615 argD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003577 argD CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0003803 argD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002717 VC2618 CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001480 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0011408 argD CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001081 argD CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0001931 argD CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000998 CDS
Automated Process Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234620 argD CDS
Automated Process Approved Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007827 argD CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003939 CDS
Automated Process Approved Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007366 argD CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004481 argD CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0256388 argD pseudogene
Automated Process Approved Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006915 argD CDS
Automated Process Approved Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008250 argD CDS
Automated Process Approved Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009443 argD CDS
Automated Process Approved Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006832 argD CDS
Automated Process Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033750 argD CDS
Automated Process Approved Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004961 argD CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004667 CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000116 CDS
Automated Process Approved Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004460 argD CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0007983 argD CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0003849 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis PB1/+ AFV-0004667 CDS
Automated Process Approved Go view Yersinia pseudotuberculosis YPIII AFW-0000293 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3579727 to 3590947
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003121yheTCDSforward35789693579991Downstream
AEC-0003122yheUCDSforward35799853580203Downstream
AEC-0003123prkBCDSforward35802573581126Downstream
AEC-0003124yhfACDScomplement35811813581585Downstream
AEC-0003125crpCDSforward35818873582519Downstream
AEC-0003126yhfKCDSforward35825583584660Downstream
AEC-0003127argDCDScomplement35847273585947Matches
AEC-0003128pabACDScomplement35860333586596Upstream
AEC-0003129ficCDScomplement35866283587230Upstream
AEC-0003130yhfGCDScomplement35872203587387Upstream
AEC-0003131ppiACDScomplement35874923588064Upstream
AEC-0003132tsgACDSforward35883353589516Upstream
AEC-0003133nirBCDSforward35897783592321Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948