Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003128 (pabA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003128 showshow history
Names
pabA ECDH10B_3536
Product
aminodeoxychorismate synthase, subunit II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3586033 3586596 564 188
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006221 (IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain) Jul 2009
Automated Process Approved IPR000991 (IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal) Jul 2009
Automated Process Approved IPR006220 (IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin) Jul 2009
Automated Process Approved IPR011702 (IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily) Jul 2009
Automated Process Approved IPR001317 (IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004049 anthranilate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pabA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010983
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3536 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aminodeoxychorismate synthase, subunit II Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain Protein Sequence Similarity - InterPro Domain: IPR006221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000991 (DEPRECATED) Glutamine amidotransferase class-I, C-terminal Protein Sequence Similarity - InterPro Domain: IPR000991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011702 (DEPRECATED) Glutamine amidotransferase superfamily Protein Sequence Similarity - InterPro Domain: IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001317 (DEPRECATED) Carbamoyl-phosphate synthase, GATase domain Protein Sequence Similarity - InterPro Domain: IPR001317
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006220 (DEPRECATED) Anthranilate synthase component II/delta crystallin Protein Sequence Similarity - InterPro Domain: IPR006220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0010983 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0010983
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006541 glutamine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011702
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006220
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004049 anthranilate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000991
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000684 pabA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000567 pabA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015486 pabA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003302 pabA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002052 pabA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008822 pabA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003489 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007736 pabA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003413 pabA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005733 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006375 pabA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008798 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080311 pabA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007130 pabA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005394 pabA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003847 pabA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008264 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004623 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008010 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006523 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006069 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009931 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009504 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005439 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007319 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005102 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005171 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005014 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004895 pabA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005497 pabA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028378 pabA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006579 pabA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008245 pabA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0010983 pabA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004009 pabA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003693 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003639 pabA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134283 pabA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002553 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003872 pabA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064391 pabA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002411 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001092 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002425 pabA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007833 pabA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004339 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003978 pabA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008086 pabA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010789 pabA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012155 pabA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005409 pabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008132 pabA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005482 pabA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006307 pabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006986 pabA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007229 pabA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008095 pabA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006758 pabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003368 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003334 pabA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004335 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008254 pabA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004737 pabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007735 pabA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004540 pabA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114114 pabA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085762 pabA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100732 pabA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005752 pabA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005178 pabA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008618 pabA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003651 pabA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009155 pabA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007509 pabA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003990 pabA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075698 pabA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089616 pabA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003578 pabA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003804 pabA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001481 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011411 pabA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001082 pabA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001930 pabA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000997 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234619 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007828 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003940 pabA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007367 pabA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003130 pabA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115868 pabA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006916 pabA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008251 pabA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009442 pabA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006831 pabA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033749 pabA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004962 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004668 pabA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000115 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004461 pabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007984 pabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003850 pabA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004668 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000292 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3581033 to 3591596
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003123prkBCDSforward35802573581126Downstream
AEC-0003124yhfACDScomplement35811813581585Downstream
AEC-0003125crpCDSforward35818873582519Downstream
AEC-0003126yhfKCDSforward35825583584660Downstream
AEC-0003127argDCDScomplement35847273585947Downstream
AEC-0003128pabACDScomplement35860333586596Matches
AEC-0003129ficCDScomplement35866283587230Upstream
AEC-0003130yhfGCDScomplement35872203587387Upstream
AEC-0003131ppiACDScomplement35874923588064Upstream
AEC-0003132tsgACDSforward35883353589516Upstream
AEC-0003133nirBCDSforward35897783592321Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948