Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003133 (nirB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003133 showshow history
Names
nirB ECDH10B_3541
Product
nitrite reductase, large subunit, NAD(P)H-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3589778 3592321 2544 848
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012744 (IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB) Jul 2009
Automated Process Approved IPR006066 (IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Automated Process Approved IPR007419 (IPR007419 BFD-like [2Fe-2S]-binding domain) Jul 2009
Automated Process Approved IPR005117 (IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain) Jul 2009
Automated Process Approved IPR006067 (IPR006067 Nitrite/sulphite reductase 4Fe-4S domain) Jul 2009
Automated Process Approved IPR017121 (IPR017121 Nitrite reductase [NAD(P)H], large subunit) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nirB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011003
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3541 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product nitrite reductase, large subunit, NAD(P)H-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007419 BFD-like [2Fe-2S]-binding domain Protein Sequence Similarity - InterPro Domain: IPR007419
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain Protein Sequence Similarity - InterPro Domain: IPR005117
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006067 Nitrite/sulphite reductase 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006067
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017121 Nitrite reductase [NAD(P)H], large subunit Protein Sequence Similarity - InterPro Domain: IPR017121
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site Protein Sequence Similarity - InterPro Domain: IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB Protein Sequence Similarity - InterPro Domain: IPR012744
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011003 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011003
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000141 nirB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000104 nirB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017401 nirB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001779 nasB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0002048 nirB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008817 nirB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003494 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007731 nirB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003417 nirB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005726 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006382 nirB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008803 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080317 nirB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007138 nirB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005388 nirB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003852 nirB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008269 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004630 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008016 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006529 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006075 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009925 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009510 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005433 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007325 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005108 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005177 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005019 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004901 nirB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005503 nirB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028383 nirB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006575 nasD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008249 nirB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011003 nirB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004004 nirB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003698 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003644 nirB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134288 nirB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002559 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003878 nirB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007839 nirB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004332 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003983 nirB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008092 nirB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010807 nirB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012136 nirB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005403 nirB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008138 nirB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005488 nirB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006302 nirB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006991 nirB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007234 nirB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008100 nirB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006753 nirB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003373 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003339 nirB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004343 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008260 nirB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004731 nirB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007741 nirB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004546 nirB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114103 nirB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085757 nirB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100757 nirB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005747 nirB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005172 nirB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008622 nirB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003656 nirB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009160 nirB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007504 nirB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0003995 nirB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075693 nirB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089621 nirB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003583 nirB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003809 nirB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001490 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011431 nirB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001092 nirB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001921 nirB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000988 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234592 nirB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003951 nirB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007377 nirB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003195 nirB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115833 nirB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006927 nirB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008414 nirB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003377 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005382 nirB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006821 nirB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033741 nirB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004974 nirB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004679 nirB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000103 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004473 nirB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007992 nirB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003858 nirB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004681 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000280 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3584778 to 3597321
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003127argDCDScomplement35847273585947Upstream
AEC-0003128pabACDScomplement35860333586596Upstream
AEC-0003129ficCDScomplement35866283587230Upstream
AEC-0003130yhfGCDScomplement35872203587387Upstream
AEC-0003131ppiACDScomplement35874923588064Upstream
AEC-0003132tsgACDSforward35883353589516Upstream
AEC-0003133nirBCDSforward35897783592321Matches
AEC-0003134nirDCDSforward35923183592644Overlaps Downstream
AEC-0003135nirCCDSforward35927703593576Downstream
AEC-0003136cysGCDSforward35935953594968Downstream
AEC-0003137yhfLCDSforward35952153595382Downstream
AEC-0003138frlACDSforward35956773597014Downstream
AEC-0003139frlBCDSforward35970353598057Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948