Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003138 (frlA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003138 showshow history
Names
frlA ECDH10B_3546
Product
predicted fructoselysine transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3595677 3597014 1338 446
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002293 (IPR002293 Amino acid/polyamine transporter I) Jul 2009
Automated Process Approved IPR004841 (IPR004841 Amino acid permease/ SLC12A domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frlA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011019
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3546 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted fructoselysine transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002293 Amino acid/polyamine transporter I Protein Sequence Similarity - InterPro Domain: IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004841 Amino acid permease/ SLC12A domain Protein Sequence Similarity - InterPro Domain: IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011019 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011019
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004841
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006865 amino acid transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015171 amino acid transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002293
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004589 frlA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0005003 frlA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008812 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007726 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005720 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006387 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008808 FrlA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007143 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005383 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008274 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004635 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008022 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006535 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006081 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009919 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009516 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005427 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007331 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005114 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005183 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005024 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005509 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028388 frlA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008254 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011019 frlA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003999 frlA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003703 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134293 frlA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002564 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003670 yhfM CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009167 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003816 frlA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3590677 to 3602014
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003133nirBCDSforward35897783592321Upstream
AEC-0003134nirDCDSforward35923183592644Upstream
AEC-0003135nirCCDSforward35927703593576Upstream
AEC-0003136cysGCDSforward35935953594968Upstream
AEC-0003137yhfLCDSforward35952153595382Upstream
AEC-0003138frlACDSforward35956773597014Matches
AEC-0003139frlBCDSforward35970353598057Downstream
AEC-0004039frlCCDSforward35981073598937Downstream
AEC-0003140frlDCDSforward35989343599719Downstream
AEC-0003141frlRCDSforward35998193600550Downstream
AEC-0003142yhfSCDScomplement36007023601787Downstream
AEC-0003143yhfTCDScomplement36017993603103Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948