Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003146 (yhfW) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003146 showshow history
Names
yhfW ECDH10B_3555
Product
predicted mutase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3604354 3605580 1227 409
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR017849 (IPR017849 (DEPRECATED) Alkaline phosphatase-like, alpha/beta/alpha) Jul 2009
Automated Process Approved IPR013553 (IPR013553 (DEPRECATED) Phosphopentomutase N-terminal) Jul 2009
Automated Process Approved IPR006124 (IPR006124 Metalloenzyme) Jul 2009
Automated Process Approved IPR010045 (IPR010045 Phosphopentomutase) Jul 2009
Automated Process Approved IPR017850 (IPR017850 Alkaline-phosphatase-like, core domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0043094 cellular metabolic compound salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008973 phosphopentomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yhfW Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011046
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3555 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted mutase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013553 (DEPRECATED) Phosphopentomutase N-terminal Protein Sequence Similarity - InterPro Domain: IPR013553
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017849 (DEPRECATED) Alkaline phosphatase-like, alpha/beta/alpha Protein Sequence Similarity - InterPro Domain: IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006124 Metalloenzyme Protein Sequence Similarity - InterPro Domain: IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010045 Phosphopentomutase Protein Sequence Similarity - InterPro Domain: IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017850 Alkaline-phosphatase-like, core domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017850
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011046 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011046
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009117 nucleotide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0043094 cellular metabolic compound salvage GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008973 phosphopentomutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010045
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004304 yhfW CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004531 yhfW CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001176 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008802 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003503 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007717 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003425 yhfW CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005710 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006396 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080326 yhfW CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007152 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005374 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003861 yhfW CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008283 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006566 deoB_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008263 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011046 yhfW CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003990 yhfW CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003712 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003653 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003887 yhfW CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003679 yhfW CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009176 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004186 yhfW CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075676 yhfW CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089634 yhfW CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003597 yhfW CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002548 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008996 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001830 yhfW CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001369 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3599354 to 3610580
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003140frlDCDSforward35989343599719Downstream
AEC-0003141frlRCDSforward35998193600550Downstream
AEC-0003142yhfSCDScomplement36007023601787Downstream
AEC-0003143yhfTCDScomplement36017993603103Downstream
AEC-0003144yhfUCDScomplement36031153603468Downstream
AEC-0003145phpCDScomplement36034793604357Overlaps Downstream
AEC-0003146yhfWCDScomplement36043543605580Matches
AEC-0003147yhfXCDScomplement36055803606743Overlaps Upstream
AEC-0003148yhfYCDScomplement36068273607189Upstream
AEC-0003149yhfZCDScomplement36072063608111Upstream
AEC-0003150trpSCDScomplement36084013609405Upstream
AEC-0003151gphCDScomplement36093983610156Upstream
AEC-0003152rpeCDScomplement36101493610826Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948