Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003150 (trpS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003150 showshow history
Names
trpS ECDH10B_3559
Product
tryptophanyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3608401 3609405 1005 335
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002306 (IPR002306 Tryptophan-tRNA ligase) Jul 2009
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Jul 2009
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Jul 2009
Automated Process Approved IPR002305 (IPR002305 Aminoacyl-tRNA synthetase, class Ic) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006436 tryptophanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004830 tryptophan-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trpS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011056
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3559 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tryptophanyl-tRNA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002306 Tryptophan-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002305 Aminoacyl-tRNA synthetase, class Ic Protein Sequence Similarity - InterPro Domain: IPR002305
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011056 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011056
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006436 tryptophanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001412
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004830 tryptophan-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002306
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000162 trpS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000154 trpS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020829 trpS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003309 trpS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001180 trpS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008797 trpS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003507 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007712 trpS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003429 trpS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005706 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006400 trpS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008227 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080330 trpS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007156 trpS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005370 trpS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003865 trpS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008287 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004641 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008028 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006541 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006087 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009913 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009522 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005421 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007337 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005120 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005189 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005030 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004914 trpS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005515 trpS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028394 trpS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006562 trpS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008268 trpS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011056 trpS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003986 trpS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003716 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003657 trpS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134298 trpS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002571 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003891 trpS CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064412 trpS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002382 trpS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001096 trpS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002448 trpS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007847 trpS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004327 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003991 trpS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008098 trpS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010832 trpS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012117 trpS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005396 trpS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008145 trpS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005495 trpS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006296 trpS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006998 trpS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007241 trpS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008108 trpS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006746 trpS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003379 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003345 trpS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004351 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008267 trpS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004724 trpS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007747 trpS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004552 trpS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114088 trpS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085751 trpS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100777 trpS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005740 trpS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005164 trpS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008630 trpS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003683 trpS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009180 trpS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007490 trpS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004179 trpS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075672 trpS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089638 trpS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003601 trpS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003829 trpS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001494 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011447 trpS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001096 trpS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001917 trpS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000984 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234578 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007844 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003955 trpS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007383 trpS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003191 trpS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115814 trpS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006934 trpS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008409 trpS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003382 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005387 trpS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006815 trpS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033736 trpS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004979 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004684 trpS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000099 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004479 trpS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007996 trpS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003862 trpS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004685 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000276 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3603401 to 3614405
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003144yhfUCDScomplement36031153603468Downstream
AEC-0003145phpCDScomplement36034793604357Downstream
AEC-0003146yhfWCDScomplement36043543605580Downstream
AEC-0003147yhfXCDScomplement36055803606743Downstream
AEC-0003148yhfYCDScomplement36068273607189Downstream
AEC-0003149yhfZCDScomplement36072063608111Downstream
AEC-0003150trpSCDScomplement36084013609405Matches
AEC-0003151gphCDScomplement36093983610156Overlaps Upstream
AEC-0003152rpeCDScomplement36101493610826Upstream
AEC-0003153damCDScomplement36108443611680Upstream
AEC-0003154damXCDScomplement36117873613073Upstream
AEC-0003155aroBCDScomplement36131653614253Upstream
AEC-0003156aroKCDScomplement36143103614831Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948