Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003151 (gph) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003151 showshow history
Names
gph ECDH10B_3560
Product
phosphoglycolate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3609398 3610156 759 253
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Jul 2009
Automated Process Approved IPR006402 (IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3) Jul 2009
Automated Process Approved IPR006346 (IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic) Jul 2009
Automated Process Approved IPR006439 (IPR006439 HAD hydrolase, subfamily IA) Jul 2009
Automated Process Approved IPR005833 (IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008967 phosphoglycolate phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006346
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gph Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011058
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3560 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoglycolate phosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006402 (DEPRECATED) HAD-superfamily hydrolase, subfamily IA, variant 3 Protein Sequence Similarity - InterPro Domain: IPR006402
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic Protein Sequence Similarity - InterPro Domain: IPR006346
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005833 (DEPRECATED) Haloacid dehalogenase/epoxide hydrolase Protein Sequence Similarity - InterPro Domain: IPR005833
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006439 HAD hydrolase, subfamily IA Protein Sequence Similarity - InterPro Domain: IPR006439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011058 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011058
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005833
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008967 phosphoglycolate phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006346
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000873 gph CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000959 gph CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020828 gph CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003310 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001181 gph CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008796 gph CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003508 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007711 gph CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003430 gph CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005705 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006401 gph CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008226 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080331 gph CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007157 gph CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005369 gph CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003866 gph CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008288 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004642 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008029 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006542 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006088 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009912 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009523 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005420 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007338 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005121 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005190 gph CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005031 gph CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004915 gph CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005516 gph CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028395 gph CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006561 gph CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008269 gph CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011058 gph CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003985 gph CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003717 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003658 gph CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134299 gph CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002572 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003892 gph CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064413 gph CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002383 gph CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001097 gph CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002449 gph CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007848 gph CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004326 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003992 gph CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008099 gph CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010835 gph CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012115 gph CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005395 gph CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008146 gph CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005496 gph CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006295 gph CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006999 gph CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007242 gph CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008109 gph CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006745 gph CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003380 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003346 gph CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004352 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008268 gph CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004723 gph CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007748 gph CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004553 gph CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114086 gph CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085750 gph CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100779 gph CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005739 gph CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005163 gph CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008631 gph CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003684 gph CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009181 gph CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007489 gph CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004178 gph CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075671 gph CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089639 gph CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003602 gph CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003830 gph CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001495 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011450 gph CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001097 gph CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001916 gph CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000983 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234577 gph CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007845 gph2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003956 gph CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007384 gph2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003190 gph CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115812 gph CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006935 gph2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008408 gph2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003383 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005388 gph2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006814 gph2 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033735 gph CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004980 gph2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004685 gph CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000098 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004480 gph2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007997 gph2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003863 gph CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004686 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000275 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3604398 to 3615156
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003146yhfWCDScomplement36043543605580Downstream
AEC-0003147yhfXCDScomplement36055803606743Downstream
AEC-0003148yhfYCDScomplement36068273607189Downstream
AEC-0003149yhfZCDScomplement36072063608111Downstream
AEC-0003150trpSCDScomplement36084013609405Overlaps Downstream
AEC-0003151gphCDScomplement36093983610156Matches
AEC-0003152rpeCDScomplement36101493610826Overlaps Upstream
AEC-0003153damCDScomplement36108443611680Upstream
AEC-0003154damXCDScomplement36117873613073Upstream
AEC-0003155aroBCDScomplement36131653614253Upstream
AEC-0003156aroKCDScomplement36143103614831Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948