Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003155 (aroB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003155 showshow history
Names
aroB ECDH10B_3564
Product
3-dehydroquinate synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3613165 3614253 1089 363
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002658 (IPR002658 (DEPRECATED) 3-dehydroquinate synthase AroB) Jul 2009
Automated Process Approved IPR016037 (IPR016037 3-dehydroquinate synthase AroB) Jul 2009
Automated Process Approved IPR016303 (IPR016303 (DEPRECATED) 3-dehydroquinate synthase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016838 carbon-oxygen lyase activity, acting on phosphates GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003856 3-dehydroquinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aroB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011067
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3564 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-dehydroquinate synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002658 (DEPRECATED) 3-dehydroquinate synthase AroB Protein Sequence Similarity - InterPro Domain: IPR002658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016303 (DEPRECATED) 3-dehydroquinate synthase Protein Sequence Similarity - InterPro Domain: IPR016303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016037 3-dehydroquinate synthase AroB Protein Sequence Similarity - InterPro Domain: IPR016037
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011067 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011067
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016838 carbon-oxygen lyase activity, acting on phosphates GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016303
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003856 3-dehydroquinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000351 aroB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000290 aroB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020823 aroB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003314 aroB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001186 aroB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008792 aroB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003513 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007707 aroB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003434 aroB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005701 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006405 aroB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008222 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080335 aroB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007161 aroB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005365 aroB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003870 aroB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008293 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004646 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008033 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006546 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006092 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009527 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005416 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007342 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005125 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005194 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005035 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004919 aroB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005520 aroB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028399 aroB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006557 aroB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008273 aroB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011067 aroB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003981 aroB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003721 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003662 aroB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134303 aroB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002576 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003896 aroB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064417 aroB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002377 aroB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002220 aroB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002453 aroB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007852 aroB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004322 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003996 aroB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008103 aroB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010847 aroB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012103 aroB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005391 aroB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008150 aroB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005500 aroB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006291 aroB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007003 aroB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007246 aroB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008113 aroB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006741 aroB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003384 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003350 aroB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004357 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008272 aroB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004719 aroB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007752 aroB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004557 aroB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114076 aroB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085746 aroB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100790 aroB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005735 aroB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005159 aroB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003688 aroB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009185 aroB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004174 aroB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075667 aroB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089643 aroB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003606 aroB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003834 aroB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001499 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011462 aroB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001101 aroB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003750 aroB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000979 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234572 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007849 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003960 aroB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007388 aroB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003186 aroB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115801 aroB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006939 aroB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008404 aroB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000682 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005392 aroB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006810 aroB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033730 aroB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004984 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004689 aroB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000094 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004484 aroB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008001 aroB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003867 aroB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004690 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000271 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3608165 to 3619253
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003150trpSCDScomplement36084013609405Downstream
AEC-0003151gphCDScomplement36093983610156Downstream
AEC-0003152rpeCDScomplement36101493610826Downstream
AEC-0003153damCDScomplement36108443611680Downstream
AEC-0003154damXCDScomplement36117873613073Downstream
AEC-0003155aroBCDScomplement36131653614253Matches
AEC-0003156aroKCDScomplement36143103614831Upstream
AEC-0003157hofQCDScomplement36152323616470Upstream
AEC-0003158yrfACDScomplement36163823616786Upstream
AEC-0003159yrfBCDScomplement36167763617216Upstream
AEC-0003160yrfCCDScomplement36172003617739Upstream
AEC-0003161yrfDCDScomplement36177393618518Upstream
AEC-0003162mrcACDSforward36186383621190Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948