Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003156 (aroK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003156 showshow history
Names
aroK ECDH10B_3565
Product
shikimate kinase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3614310 3614831 522 174
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000623 (IPR000623 Shikimate kinase/Threonine synthase-like 1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004765 shikimate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aroK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011069
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3565 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product shikimate kinase I Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000623 Shikimate kinase/Threonine synthase-like 1 Protein Sequence Similarity - InterPro Domain: IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011069 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011069
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0004765 shikimate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000214 aroK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000253 aroK CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020822 aroK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003315 aroK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001187 aroK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008791 aroK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003514 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007706 aroK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003435 aroK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005700 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006406 aroK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008221 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080336 aroK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007162 aroK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005364 aroK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003871 aroK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008294 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004647 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008034 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006547 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006093 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005328 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009528 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005415 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007343 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005126 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005195 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005036 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004920 aroK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005521 aroK CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028400 aroK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006556 aroK CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008274 aroK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011069 aroK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003980 aroK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003722 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003663 aroK CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134304 aroK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002577 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003897 aroK CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064418 aroK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002387 aroK CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002221 aroK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002454 aroK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007853 aroK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004321 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0003997 aroK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008104 aroK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010849 aroK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012099 aroK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005390 aroK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008151 aroK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005501 aroK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006290 aroK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007004 aroK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007247 aroK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008114 aroK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006740 aroK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003385 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003351 aroK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008273 aroK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004718 aroK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007753 aroK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004558 aroK CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114073 aroK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085745 aroK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100792 aroK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005734 aroK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005158 aroK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005068 aroK CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003689 aroK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009186 aroK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003520 aroK CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004173 aroK CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075666 aroK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089644 aroK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003607 aroK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003835 aroK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001500 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011465 aroK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001102 aroK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003751 aroK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000978 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234570 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007850 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003961 aroK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007389 aroK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003185 aroK CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115797 aroK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006940 aroK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008403 aroK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000683 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005393 aroK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006809 aroK CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033729 aroK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004985 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004690 aroK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000093 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004485 aroK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008002 aroK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003868 aroK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004691 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000270 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3609310 to 3619831
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003150trpSCDScomplement36084013609405Downstream
AEC-0003151gphCDScomplement36093983610156Downstream
AEC-0003152rpeCDScomplement36101493610826Downstream
AEC-0003153damCDScomplement36108443611680Downstream
AEC-0003154damXCDScomplement36117873613073Downstream
AEC-0003155aroBCDScomplement36131653614253Downstream
AEC-0003156aroKCDScomplement36143103614831Matches
AEC-0003157hofQCDScomplement36152323616470Upstream
AEC-0003158yrfACDScomplement36163823616786Upstream
AEC-0003159yrfBCDScomplement36167763617216Upstream
AEC-0003160yrfCCDScomplement36172003617739Upstream
AEC-0003161yrfDCDScomplement36177393618518Upstream
AEC-0003162mrcACDSforward36186383621190Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948