Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003162 (mrcA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003162 showshow history
Names
mrcA ECDH10B_3571
Product
fused penicillin-binding protein 1a: murein transglycosylase; murein transpeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3618638 3621190 2553 851
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001264 (IPR001264 Glycosyl transferase, family 51) Jul 2009
Automated Process Approved IPR001460 (IPR001460 Penicillin-binding protein, transpeptidase) Jul 2009
Automated Process Approved IPR011816 (IPR011816 (DEPRECATED) Penicillin-binding protein 1A) Jul 2009
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mrcA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011082
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_3571 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product fused penicillin-binding protein 1a: murein transglycosylase; murein transpeptidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR001460 Penicillin-binding protein, transpeptidase Protein Sequence Similarity - InterPro Domain: IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR001264 Glycosyl transferase, family 51 Protein Sequence Similarity - InterPro Domain: IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR011816 (DEPRECATED) Penicillin-binding protein 1A Protein Sequence Similarity - InterPro Domain: IPR011816
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011082 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011082
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0046677 response to antibiotic GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0009274 peptidoglycan-based cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001264
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008658 penicillin binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001460
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011816
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000928 mrcA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000770 mrcA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015100 mrcA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003321 mrcA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001194 mrcA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004931 mrcA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003520 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007700 mrcA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003440 mrcA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005691 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006412 mrcA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008215 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080342 mrcA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007168 mrcA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005358 mrcA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003877 mrcA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008300 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004653 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008040 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006553 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006099 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005322 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009535 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005408 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007350 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005132 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005201 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005042 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004927 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005528 mrcA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028406 mrcA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006550 mrcA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008279 mrcA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011082 mrcA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003974 mrcA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003728 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003670 mrcA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134310 mrcA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002583 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003903 mrcA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064424 mrcA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002447 mrcA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001099 mrcA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002461 mrcA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007859 mrcA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004315 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004003 mrcA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008110 mrcA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010868 mrcA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012079 mrcA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005384 mrcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008157 mrcA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005507 mrcA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006283 mrcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007010 mrcA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007253 mrcA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008120 mrcA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006734 mrcA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003391 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003357 mrcA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004365 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008279 mrcA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004712 mrcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007759 mrcA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004564 mrcA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114063 mrcA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085739 mrcA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100808 mrcA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005728 mrcA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005152 mrcA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005074 mrcA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003695 mrcA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009192 mrcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003513 mrcA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004166 mrcA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075659 mrcA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089649 mrcA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003613 mrcA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003841 mrcA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001506 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011478 b3396 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001108 mrcA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003757 mrcA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000972 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234555 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007856 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003969 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007395 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003179 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115786 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006946 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008398 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004198 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005400 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006802 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033720 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004993 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004697 mrcA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000084 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004491 mrcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008008 mrcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003874 mrcA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004699 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000262 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3613638 to 3626190
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003155aroBCDScomplement36131653614253Upstream
AEC-0003156aroKCDScomplement36143103614831Upstream
AEC-0003157hofQCDScomplement36152323616470Upstream
AEC-0003158yrfACDScomplement36163823616786Upstream
AEC-0003159yrfBCDScomplement36167763617216Upstream
AEC-0003160yrfCCDScomplement36172003617739Upstream
AEC-0003161yrfDCDScomplement36177393618518Upstream
AEC-0003162mrcACDSforward36186383621190Matches
AEC-0003163nudECDScomplement36213563621916Downstream
AEC-0003164yrfFCDSforward36222363624371Downstream
AEC-0003165yrfGCDSforward36244363625104Downstream
AEC-0003166hslRCDSforward36251153625516Downstream
AEC-0003167hslOCDSforward36255413626419Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948