Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003163 (nudE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003163 showshow history
Names
nudE ECDH10B_3572
Product
ADP-ribose diphosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3621356 3621916 561 187
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000086 (IPR000086 NUDIX hydrolase domain) Jul 2009
Automated Process Approved IPR015797 (IPR015797 NUDIX hydrolase-like domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name nudE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011086
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3572 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ADP-ribose diphosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015797 NUDIX hydrolase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015797
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000086 NUDIX hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011086 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011086
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000086
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000803 nudE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001086 nudE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015099 nudE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003322 nudE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001195 nudE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004930 nudE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003521 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007699 nudE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003441 nudE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005690 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006413 nudE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008214 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080343 nudE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007169 nudE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005357 nudE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003878 nudE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008301 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004654 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008041 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006554 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006100 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005321 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009536 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005407 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007351 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005133 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005202 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005043 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004928 nudE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005529 nudE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028407 nudE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006549 nudE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008280 nudE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011086 nudE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003973 nudE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003729 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003671 nudE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134311 nudE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002584 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003904 nudE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064425 nudE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002389 nudE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002224 nudE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002462 nudE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007860 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004314 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004004 nudE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008111 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010874 yrfE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012076 yrfE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005381 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008158 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005508 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006282 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007011 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007254 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008121 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006733 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003392 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003358 nudE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004366 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008280 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004711 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007760 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004565 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114060 nudE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085738 nudE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100810 nudE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005727 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005151 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005075 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003696 yrfE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009193 nudE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003512 nudE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004165 yrfE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075657 nudE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089650 nudE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003614 yrfE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003842 nudE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001507 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011483 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001109 nudE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003758 nudE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000971 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234554 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007857 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003971 nudE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007396 nudE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003178 nudE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115783 nudE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006947 nudE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008397 nudE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004197 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005401 nudE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006801 nudE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033719 nudE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004994 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004699 nudE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000083 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004492 nudE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008009 nudE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003875 nudE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004701 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000221 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3616356 to 3626916
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003157hofQCDScomplement36152323616470Downstream
AEC-0003158yrfACDScomplement36163823616786Downstream
AEC-0003159yrfBCDScomplement36167763617216Downstream
AEC-0003160yrfCCDScomplement36172003617739Downstream
AEC-0003161yrfDCDScomplement36177393618518Downstream
AEC-0003162mrcACDSforward36186383621190Downstream
AEC-0003163nudECDScomplement36213563621916Matches
AEC-0003164yrfFCDSforward36222363624371Upstream
AEC-0003165yrfGCDSforward36244363625104Upstream
AEC-0003166hslRCDSforward36251153625516Upstream
AEC-0003167hslOCDSforward36255413626419Upstream
AEC-0003168yhgECDScomplement36264823628206Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948