Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003169 (pck) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003169 showshow history
Names
pck ECDH10B_3578
Product
phosphoenolpyruvate carboxykinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3628585 3630207 1623 541
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008210 (IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal) Jul 2009
Automated Process Approved IPR013035 (IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal) Jul 2009
Automated Process Approved IPR015994 (IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site) Jul 2009
Automated Process Approved IPR001272 (IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017076 purine nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004611 phosphoenolpyruvate carboxykinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pck Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011106
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3578 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoenolpyruvate carboxykinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013035
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR008210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site Protein Sequence Similarity - InterPro Domain: IPR015994
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising Protein Sequence Similarity - InterPro Domain: IPR001272
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011106 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011106
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006094 gluconeogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004611 phosphoenolpyruvate carboxykinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017076 purine nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000180 pck CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000111 pck CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015088 pck CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003326 pckA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001200 pckA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004923 pckA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003527 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007692 pckA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003447 pckA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005683 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006421 pckA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008205 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080352 pck CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007177 pckA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005349 pckA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003884 pck CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008310 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004663 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008048 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006561 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006107 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005314 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009543 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005400 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007358 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005140 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005209 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005050 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004935 pckA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005537 pckA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028414 pck CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006540 pckA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008288 pckA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011106 pck CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003967 pck CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003737 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003679 pckA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134317 pck CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002593 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003912 pckA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064431 pck CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002443 pckA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002467 pck CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007868 pckA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004308 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004011 pck CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008117 pckA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010890 pckA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012059 pckA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005374 pckA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008165 pckA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005515 pckA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006275 pckA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007018 pckA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007261 pckA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008128 pckA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006727 pckA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003398 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003364 pck CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004375 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008287 pckA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004705 pckA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007767 pckA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004572 pckA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114048 pck CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085732 pck CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100829 pck CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005720 pckA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005145 pckA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005082 pckA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003702 pckA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009201 pckA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003504 pckA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004156 pckA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075651 pck CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089657 pck CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003620 pckA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003848 pck CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001512 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011495 pck CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001114 pck CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003763 pck CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000966 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234542 pck CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007862 pckA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003977 pck CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007401 pckA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004260 pckA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115766 pck CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006952 pckA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008392 pckA CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005406 pckA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006796 pckA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033714 pck CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004999 pckA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004705 pck CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000077 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004497 pckA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008014 pckA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003880 pck CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004708 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000214 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3623585 to 3635207
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003164yrfFCDSforward36222363624371Upstream
AEC-0003165yrfGCDSforward36244363625104Upstream
AEC-0003166hslRCDSforward36251153625516Upstream
AEC-0003167hslOCDSforward36255413626419Upstream
AEC-0003168yhgECDScomplement36264823628206Upstream
AEC-0003169pckCDSforward36285853630207Matches
AEC-0003170envZCDScomplement36302833631635Downstream
AEC-0003171ompRCDScomplement36316323632351Downstream
AEC-0003172greBCDSforward36325793633055Downstream
AEC-0003173yhgFCDSforward36331523635473Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948