Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003177 (bioH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003177 showshow history
Names
bioH ECDH10B_3587
Product
carboxylesterase of pimeloyl-CoA synthesis
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3639841 3640611 771 257
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000073 (IPR000073 Alpha/beta hydrolase fold-1) Jul 2009
Automated Process Approved IPR010076 (IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bioH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3587 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product carboxylesterase of pimeloyl-CoA synthesis Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase Protein Sequence Similarity - InterPro Domain: IPR010076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000073 Alpha/beta hydrolase fold-1 Protein Sequence Similarity - InterPro Domain: IPR000073
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011136 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000340 bioH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000412 bioH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015079 bioH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003335 bioH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001217 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004914 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003536 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007683 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003454 bioH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005673 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006430 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080365 bioH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007187 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005340 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003894 bioH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008320 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004673 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008058 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006571 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006117 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005304 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009553 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005390 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007368 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005150 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005219 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005060 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004945 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005547 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028423 bioH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006531 bioH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008297 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011136 bioH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003958 bioH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003750 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003690 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134326 bioH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002603 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003922 bioH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064457 bioH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002372 bioH CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001108 bioH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002510 bioH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007878 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004298 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004022 bioH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008127 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010925 bioH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0012027 bioH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005364 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008175 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005525 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006266 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007028 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007271 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008138 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006717 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003407 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003373 bioH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004386 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008297 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004695 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007777 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004582 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114028 bioH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085723 bioH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100855 bioH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005710 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005135 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005092 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003714 bioH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009212 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003493 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004147 bioH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075638 bioH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089670 bioH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003633 bioH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003859 bioH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003625 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011520 bioH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001122 bioH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001544 bioH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000956 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234517 bioH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007871 bioH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003988 bioH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008751 bioH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003164 bioH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115732 bioH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006962 bioH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008381 bioH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001344 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005416 bioH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007822 bioH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033704 bioH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005010 bioH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004716 bioH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000066 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004507 bioH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008024 bioH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003889 bioH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004719 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000203 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3634841 to 3645611
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003173yhgFCDSforward36331523635473Downstream
AEC-0003174feoACDSforward36359303636157Downstream
AEC-0003175feoBCDSforward36361743638495Downstream
AEC-0003176yhgGCDSforward36384953638731Downstream
AEC-0003177bioHCDScomplement36398413640611Matches
AEC-0003178gntXCDSforward36406493641332Upstream
AEC-0003179gntYCDSforward36413913641966Upstream
AEC-0003180gntTCDSforward36423263643642Upstream
AEC-0003181malQCDScomplement36437533645837Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948