Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003182 (malP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003182 showshow history
Names
malP ECDH10B_3592
Product
maltodextrin phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3645847 3648240 2394 798
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000811 (IPR000811 Glycosyl transferase, family 35) Jul 2009
Automated Process Approved IPR011833 (IPR011833 Glycogen/starch/alpha-glucan phosphorylase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000811
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004645 1,4-alpha-oligoglucan phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000811
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011154
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3592 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product maltodextrin phosphorylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000811 Glycosyl transferase, family 35 Protein Sequence Similarity - InterPro Domain: IPR000811
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011833 Glycogen/starch/alpha-glucan phosphorylase Protein Sequence Similarity - InterPro Domain: IPR011833
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011154 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011154
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000811
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004645 1,4-alpha-oligoglucan phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000811
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011833
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000021 malP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000018 malP CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011154 malP CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3640847 to 3653240
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003178gntXCDSforward36406493641332Downstream
AEC-0003179gntYCDSforward36413913641966Downstream
AEC-0003180gntTCDSforward36423263643642Downstream
AEC-0003181malQCDScomplement36437533645837Downstream
AEC-0003182malPCDScomplement36458473648240Matches
AEC-0003183malTCDSforward36488523651557Upstream
AEC-0004029rtcACDScomplement36516003652616Upstream
AEC-0003184rtcBCDScomplement36526203653846Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948