Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003189 (glpD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003189 showshow history
Names
glpD ECDH10B_3600
Product
sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3657781 3659286 1506 502
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000447 (IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase) Jul 2009
Automated Process Approved IPR006076 (IPR006076 FAD dependent oxidoreductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009331 glycerol-3-phosphate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glpD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011191
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3600 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006076 FAD dependent oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011191 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011191
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006072 glycerol-3-phosphate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009331 glycerol-3-phosphate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006076
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000447
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001396 glpD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001157 glpD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015062 glpD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003351 glpD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001232 glpD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004900 glpD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003549 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007670 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003467 glpD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005660 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006446 glpD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007569 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080379 glpD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007202 glpD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005326 glpD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003907 glpD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008335 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004689 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008073 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006586 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006132 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005289 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009568 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005374 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007383 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005165 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005234 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005075 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004961 glpD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005562 glpD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028441 glpD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006516 glpD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008311 glpD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011191 glpD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003945 glpD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003763 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003703 glpD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134341 glpD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002618 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003935 glpD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064466 glpD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003550 glpD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004281 glpD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002522 glpD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007894 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004288 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004040 glpD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008144 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0010977 glpD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011977 glpD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005354 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008192 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005542 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006256 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007044 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007287 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008148 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006701 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003417 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003383 glpD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004400 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008314 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004678 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007787 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004592 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0114005 glpD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085713 glpD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100916 glpD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005700 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005120 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005109 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003727 glpD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009227 glpD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003479 glpD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004132 glpD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089682 glpD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003646 glpD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003995 glpD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000117 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011553 glyD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001131 glpD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001535 glpD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000764 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242214 glpD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008250 glpD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004492 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007420 glpD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005931 glpD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007305 glpD pseudogene
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006044 glpD pseudogene
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007808 glpD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033686 glpD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006826 glpD pseudogene
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004306 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003953 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006729 glpD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008036 glpD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003900 glpD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004733 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000187 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3652781 to 3664286
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003184rtcBCDScomplement36526203653846Upstream
AEC-0003185rtcRCDSforward36540353655633Upstream
AEC-0003186glpRCDScomplement36556153656373Upstream
AEC-0003187glpGCDScomplement36563903657220Upstream
AEC-0003188glpECDScomplement36572653657591Upstream
AEC-0003189glpDCDSforward36577813659286Matches
AEC-0004537pseudogenecomplement36595003659559Downstream
AEC-0003190yzgLpseudogenecomplement36595553659773Downstream
AEC-0003191glgPCDScomplement36599023662349Downstream
AEC-0003192glgACDScomplement36623683663801Downstream
AEC-0003193glgCCDScomplement36638013665096Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948