Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003198 (gntK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003198 showshow history
Names
gntK ECDH10B_3610
Product
gluconate kinase 2; gluconate transport, GNT I system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3672833 3673360 528 176
Sequence

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Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000623 (IPR000623 Shikimate kinase/Threonine synthase-like 1) Jul 2009
Automated Process Approved IPR006001 (IPR006001 Carbohydrate kinase, thermoresistant glucokinase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004765 shikimate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gntK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011224
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3610 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product gluconate kinase 2; gluconate transport, GNT I system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000623 Shikimate kinase/Threonine synthase-like 1 Protein Sequence Similarity - InterPro Domain: IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006001 Carbohydrate kinase, thermoresistant glucokinase Protein Sequence Similarity - InterPro Domain: IPR006001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011224 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011224
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004765 shikimate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016301 kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000623
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Hypervariable
Person Uncurated Go view Dickeya dadantii 3937 ABF-0015047 gntK CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064484 pseudogene
Person Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003554 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004306 gntV CDS
Person Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000127 CDS
Person Uncurated Go view Yersinia enterocolitica 8081 BAH-0011597 CDS
Person Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001148 gntK_1 CDS
Person Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001523 gntK CDS
Person Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000752 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242250 gntK CDS
Person Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004509 gntK CDS
Person Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003438 gntK CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128608 gntK CDS
Person Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001486 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033671 gntK CDS
Person Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004324 gntK CDS
Person Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003970 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008056 gntK CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003914 gntK CDS
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001117 gntK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000429 gntK CDS
Paralog
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0003944 idnK CDS
Ortholog
Person Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003361 gntK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001370 aroK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004887 gntK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0003570 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007657 gntK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0003487 gntK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005645 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006461 gntK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007556 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0080401 gntK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007215 gntK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005311 gntK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003919 gntK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0008348 gntK CDS
Person Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004706 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008090 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006604 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006150 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005273 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009587 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005358 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007402 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005183 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005252 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005092 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004979 gntK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005581 gntK CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0028459 gntK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006493 gntK_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0008324 gntK CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0011224 gntK CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0003935 gntK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003776 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003717 gntK CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0134358 gntK CDS
Person Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002634 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0003954 gntK CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003849 gntK CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0137907 gntK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007909 aroK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004280 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004056 gntK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008159 aroK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011032 gntK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011929 gntK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005339 aroK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008209 aroK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005559 aroK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006243 aroK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007060 aroK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007302 aroK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008164 aroK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006686 aroK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003426 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003392 gntK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004417 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008330 aroK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004663 aroK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007800 aroK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004604 aroK CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0113985 gntK CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0085705 gntK CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0100960 gntK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005685 aroK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005109 aroK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005125 aroK CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0003751 gntK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009308 gntK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003467 gntK CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0004064 gntK CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0075609 gntK CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0089693 gntK CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0003659 gntK CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0004013 gntK CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3667833 to 3678360
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003195glgBCDScomplement36670843669270Downstream
AEC-0003196asdCDScomplement36695433670646Downstream
AEC-0003197yhgNCDSforward36708393671432Downstream
AEC-0004030gntUCDScomplement36714893672829Downstream
AEC-0003198gntKCDScomplement36728333673360Matches
AEC-0003199gntRCDScomplement36734993674494Upstream
AEC-0003200yhhWCDScomplement36747183675413Upstream
AEC-0003201yhhXCDScomplement36755363676573Upstream
AEC-0004281ryhBncRNAcomplement36766913676784Upstream
AEC-0003202yhhYCDSforward36769063677394Upstream
AEC-0003203yhhZCDSforward36776313678809Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948