Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003208 (ggt) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003208 showshow history
Names
ggt ECDH10B_3621
Product
gamma-glutamyltranspeptidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3680849 3682591 1743 581
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000101 (IPR000101 Gamma-glutamyltranspeptidase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0003840 (OBSOLETE) gamma-glutamyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ggt Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011257
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3621 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product gamma-glutamyltranspeptidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000101 Gamma-glutamyltranspeptidase Protein Sequence Similarity - InterPro Domain: IPR000101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011257 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011257
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0003840 (OBSOLETE) gamma-glutamyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001052 ggt CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001123 ggt CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017420 ggt CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003368 ggt CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001376 ggt CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004878 ggt CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003578 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007647 ggt CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003496 ggt CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005636 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006470 ggt CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007546 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080412 ggt CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007224 ggt CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005301 ggt CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003925 ggt CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008357 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008098 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006612 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006158 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005265 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009595 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005350 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007410 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005191 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005259 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005100 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004987 ggt CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005589 ggt CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028467 ggt CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006484 ggt CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008333 ggt CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011257 ggt CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003924 ggt CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003784 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003723 ggt CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134365 ggt CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002641 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003963 ggt CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064717 ggt CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002585 ggt CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004349 ggt CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000760 ggt CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007920 ggt CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004275 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004066 ggt CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008170 ggt CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011061 ggt CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011900 ggt CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005328 ggt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008221 ggt CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005571 ggt CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006232 ggt CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007072 ggt CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007314 ggt CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008175 ggt CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006674 ggt CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003436 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003402 ggt CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004431 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008341 ggt CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004652 ggt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007811 ggt CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004615 ggt CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113962 ggt CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085696 ggt CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100990 ggt CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005673 ggt CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005098 ggt CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005137 ggt CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003761 ggt CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004072 ggt CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075604 ggt CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089698 ggt CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003664 ggt CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004020 ggt CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002872 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009187 ggt CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001894 ggt CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000898 ggt CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000821 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003229 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002211 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004461 ggt CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030637 ggt CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001088 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003395 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007135 ggt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000976 ggt CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001142 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003875 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3675849 to 3687591
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003201yhhXCDScomplement36755363676573Downstream
AEC-0004281ryhBncRNAcomplement36766913676784Downstream
AEC-0003202yhhYCDSforward36769063677394Downstream
AEC-0003203yhhZCDSforward36776313678809Downstream
AEC-0003204yrhApseudogeneforward36788063679195(Interval #1) Downstream
AEC-0000049IS1A.5repeat_regionforward36791963679963Downstream
AEC-0003205insA-6CDSforward36792513679526Downstream
AEC-0003206insB-6CDSforward36794453679948Downstream
AEC-0003204yrhApseudogeneforward36799733680077(Interval #2) Downstream
AEC-0003207yrhBCDSforward36805273680811Downstream
AEC-0003208ggtCDScomplement36808493682591Matches
AEC-0003209yhhACDSforward36827113683151Upstream
AEC-0003210ugpQCDScomplement36831383683881Upstream
AEC-0003211ugpCCDScomplement36838783684948Upstream
AEC-0003212ugpECDScomplement36849503685795Upstream
AEC-0003213ugpACDScomplement36857923686679Upstream
AEC-0003214ugpBCDScomplement36867773688093Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948