Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003211 (ugpC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003211 showshow history
Names
ugpC ECDH10B_3624
Product
glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3683878 3684948 1071 357
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR013611 (IPR013611 Transport-associated OB, type 2) Jul 2009
Automated Process Approved IPR008995 (IPR008995 Molybdate/tungstate binding, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ugpC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011266
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3624 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycerol-3-phosphate transporter subunit; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013611 Transport-associated OB, type 2 Protein Sequence Similarity - InterPro Domain: IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008995 Molybdate/tungstate binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011266 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011266
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001923 ugpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001925 ugpC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019160 ugpC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003371 ugpC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001379 ugpC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004875 ugpC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003581 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007644 ugpC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003499 ugpC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005632 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007543 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080415 ugpC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007227 ugpC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005298 ugpC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003928 ugpC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008361 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004716 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008101 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006615 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006161 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005262 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009598 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005347 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007413 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005194 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005262 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005103 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004990 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005592 ugpC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028470 ugpC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006481 ugpC_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008336 ugpC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011266 ugpC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003921 ugpC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003787 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003726 ugpC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134368 ugpC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002644 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003966 ugpC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064657 ugpC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002558 ugpC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002273 ugpC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000705 ugpC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007923 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004272 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004069 ugpC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008173 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011069 ugpC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011891 ugpC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005325 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008224 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005574 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006229 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007075 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007317 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008178 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006671 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003439 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003405 ugpC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004435 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008344 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004649 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007814 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004618 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113956 ugpC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085693 ugpC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0100998 ugpC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005670 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005095 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005140 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003764 ugpC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009292 ugpC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003451 ugpC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004023 ugpC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001887 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000761 ugpC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002560 ugpC_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001655 ugpC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001976 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242093 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007775 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000296 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007582 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003584 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128048 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008148 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006536 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004048 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008531 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007527 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030044 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006982 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000224 ugpC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004083 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008090 ugpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004194 ugpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000259 ugpC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000309 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004693 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3678878 to 3689948
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003204yrhApseudogeneforward36788063679195(Interval #1) Downstream
AEC-0000049IS1A.5repeat_regionforward36791963679963Downstream
AEC-0003205insA-6CDSforward36792513679526Downstream
AEC-0003206insB-6CDSforward36794453679948Downstream
AEC-0003204yrhApseudogeneforward36799733680077(Interval #2) Downstream
AEC-0003207yrhBCDSforward36805273680811Downstream
AEC-0003208ggtCDScomplement36808493682591Downstream
AEC-0003209yhhACDSforward36827113683151Downstream
AEC-0003210ugpQCDScomplement36831383683881Overlaps Downstream
AEC-0003211ugpCCDScomplement36838783684948Matches
AEC-0003212ugpECDScomplement36849503685795Upstream
AEC-0003213ugpACDScomplement36857923686679Upstream
AEC-0003214ugpBCDScomplement36867773688093Upstream
AEC-0003215livFCDScomplement36884923689205Upstream
AEC-0003216livGCDScomplement36892073689974Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948