Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003213 (ugpA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003213 showshow history
Names
ugpA ECDH10B_3626
Product
glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3685792 3686679 888 296
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ugpA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011272
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3626 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycerol-3-phosphate transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011272 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011272
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001754 ugpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001767 ugpA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046843 ugpA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003373 ugpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001381 ugpA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004873 ugpA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003583 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007642 ugpA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003501 ugpA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005630 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006475 ugpA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007541 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080417 ugpA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007229 ugpA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005296 ugpA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003930 ugpA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008363 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004718 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008103 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006617 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006163 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005260 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009600 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005345 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007415 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005196 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005264 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005105 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004992 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005594 ugpA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028472 ugpA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006479 ugpA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008338 ugpA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011272 ugpA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003919 ugpA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003789 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003728 ugpA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134370 ugpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002646 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003968 ugpA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064659 ugpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002547 ugpA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004330 ugpA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000707 ugpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007925 ugpA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004270 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004071 ugpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008175 ugpA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011079 ugpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011882 ugpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005323 ugpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008226 ugpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005576 ugpA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006227 ugpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007077 ugpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007319 ugpA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008180 ugpA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006669 ugpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003441 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003407 ugpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004437 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008346 ugpA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004647 ugpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007816 ugpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004620 ugpA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113950 ugpA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085691 ugpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101004 ugpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005668 ugpA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005093 ugpA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005142 ugpA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009290 ugpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003449 ugpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004077 ugpA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075599 ugpA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089703 ugpA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003669 ugpA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004025 ugpA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001885 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000753 ugpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002558 ugpA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001657 ugpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001978 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242078 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007777 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000294 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007584 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003582 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128062 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008146 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006534 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004050 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008529 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007525 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030042 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006980 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000222 ugpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004085 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008092 ugpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004192 ugpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000257 ugpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000307 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004695 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3680792 to 3691679
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003207yrhBCDSforward36805273680811Downstream
AEC-0003208ggtCDScomplement36808493682591Downstream
AEC-0003209yhhACDSforward36827113683151Downstream
AEC-0003210ugpQCDScomplement36831383683881Downstream
AEC-0003211ugpCCDScomplement36838783684948Downstream
AEC-0003212ugpECDScomplement36849503685795Overlaps Downstream
AEC-0003213ugpACDScomplement36857923686679Matches
AEC-0003214ugpBCDScomplement36867773688093Upstream
AEC-0003215livFCDScomplement36884923689205Upstream
AEC-0003216livGCDScomplement36892073689974Upstream
AEC-0003217livMCDScomplement36899713691248Upstream
AEC-0003218livHCDScomplement36912453692171Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948