Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003214 (ugpB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003214 showshow history
Names
ugpB ECDH10B_3627
Product
glycerol-3-phosphate transporter subunit ; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3686777 3688093 1317 439
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006061 (IPR006061 Solute-binding family 1, conserved site) Jul 2009
Automated Process Approved IPR006059 (IPR006059 Bacterial extracellular solute-binding protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ugpB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011274
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_3627 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product glycerol-3-phosphate transporter subunit ; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR006061 Solute-binding family 1, conserved site Protein Sequence Similarity - InterPro Domain: IPR006061
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR006059 Bacterial extracellular solute-binding protein Protein Sequence Similarity - InterPro Domain: IPR006059
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011274 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011274
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006061
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001799 ugpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001815 ugpB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017679 ugpB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003374 ugpB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001382 ugpB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004872 ugpB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003584 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007641 ugpB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003502 ugpB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005628 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006476 ugpB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007540 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080418 ugpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007230 ugpB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005295 ugpB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003931 ugpB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008364 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004719 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008104 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006618 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006164 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005259 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009601 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005344 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007416 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005197 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005265 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005106 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004993 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005595 ugpB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028473 ugpB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006478 ugpB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008339 ugpB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011274 ugpB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003918 ugpB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003790 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003729 ugpB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134371 ugpB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002647 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003969 ugpB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064660 ugpB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002553 ugpB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002274 ugpB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000708 ugpB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007926 ugpB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004269 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004074 ugpB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008176 ugpB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011083 ugpB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011877 ugpB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005322 ugpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008227 ugpB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005577 ugpB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006226 ugpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007078 ugpB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007320 ugpB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008181 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006668 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003442 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003408 ugpB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004438 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008347 ugpB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004646 ugpB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007817 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004621 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113947 ugpB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085690 ugpB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101008 ugpB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005667 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005092 ugpB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005143 ugpB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009289 ugpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003448 ugpB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004078 ugpB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075598 ugpB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089704 ugpB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003670 ugpB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001884 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000749 ugpB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002556 mdxE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001658 ugpB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001979 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242076 ugpB5 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007778 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000292 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007585 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003581 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128071 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008145 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006533 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004051 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008528 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007524 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030041 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006979 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000220 ugpB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004086 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008093 ugpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004191 ugpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000256 ugpB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004696 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3681777 to 3693093
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003208ggtCDScomplement36808493682591Downstream
AEC-0003209yhhACDSforward36827113683151Downstream
AEC-0003210ugpQCDScomplement36831383683881Downstream
AEC-0003211ugpCCDScomplement36838783684948Downstream
AEC-0003212ugpECDScomplement36849503685795Downstream
AEC-0003213ugpACDScomplement36857923686679Downstream
AEC-0003214ugpBCDScomplement36867773688093Matches
AEC-0003215livFCDScomplement36884923689205Upstream
AEC-0003216livGCDScomplement36892073689974Upstream
AEC-0003217livMCDScomplement36899713691248Upstream
AEC-0003218livHCDScomplement36912453692171Upstream
AEC-0003219livKCDScomplement36922193693328Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948