Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003218 (livH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003218 showshow history
Names
livH ECDH10B_3631
Product
leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3691245 3692171 927 309
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name livH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011290
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3631 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product leucine/isoleucine/valine transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011290 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011290
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001524 livH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001601 livH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017657 livH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003380 livH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001388 livH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004867 livH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003588 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007636 livH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003506 livH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005623 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006480 livH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007535 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080423 livH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007235 livH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005291 livH CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003935 livH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008369 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004724 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008111 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006624 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006170 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005253 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009608 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005338 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007422 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005203 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005271 livH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005112 livH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0004999 livH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005601 livH CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028479 livH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006473 livH CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008344 livH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011290 livH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003914 livH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003794 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003736 livH CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134376 livH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002652 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0003973 livH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064678 livH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002578 livH CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002278 livH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000726 livH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007932 livH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004265 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004080 livH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008182 livH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011104 livH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011858 livH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005316 livH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008233 livH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005583 livH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006220 livH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007084 livH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007326 livH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008187 livH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006661 livH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003447 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003413 livH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004444 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008353 livH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004639 livH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007823 livH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004627 livH CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113934 livH CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085685 livH CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101025 livH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005661 livH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005086 livH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005149 livH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003770 livH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009284 livH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003442 livH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004083 livH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075593 livH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089708 livH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003674 livH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004030 livH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001874 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000719 livH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002546 livH_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001668 livH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001992 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242042 livH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007790 livH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000274 livH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007597 livH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003570 livH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128103 livH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008134 livH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006522 livH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002757 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008517 livH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007513 livH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030030 livH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006967 livH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000202 livH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004104 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008104 livH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004180 livH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000245 livH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000288 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004715 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3686245 to 3697171
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003213ugpACDScomplement36857923686679Downstream
AEC-0003214ugpBCDScomplement36867773688093Downstream
AEC-0003215livFCDScomplement36884923689205Downstream
AEC-0003216livGCDScomplement36892073689974Downstream
AEC-0003217livMCDScomplement36899713691248Overlaps Downstream
AEC-0003218livHCDScomplement36912453692171Matches
AEC-0003219livKCDScomplement36922193693328Upstream
AEC-0003220yhhKCDSforward36937523694135Upstream
AEC-0003221livJCDScomplement36943233695426Upstream
AEC-0003222rpoHCDScomplement36956973696551Upstream
AEC-0003223ftsXCDScomplement36967963697854Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948