Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003236 (acpT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003236 showshow history
Names
acpT ECDH10B_3649
Product
holo-(acyl carrier protein) synthase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3708737 3709324 588 196
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008278 (IPR008278 4'-phosphopantetheinyl transferase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name acpT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011351
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3649 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product holo-(acyl carrier protein) synthase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR008278 4'-phosphopantetheinyl transferase domain Protein Sequence Similarity - InterPro Domain: IPR008278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011351 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011351
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009059 macromolecule biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008897 holo-[acyl-carrier-protein] synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008278
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002891 acpT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003063 acpT CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001419 acpT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004848 acpT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003608 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007617 acpT CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003529 acpT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005602 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006498 acpT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010547 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080444 acpT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005272 acpT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003955 acpT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008390 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004767 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008152 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006665 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006211 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005212 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009649 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005297 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007463 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005244 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005312 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005151 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005041 acpT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005640 acpT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028519 acpT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005483 sfp_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008363 acpT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011351 acpT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003896 acpT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003814 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003756 acpT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134414 acpT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002692 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004000 acpT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007952 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004246 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004106 acpT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008203 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011176 acpT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011785 acpT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005294 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008253 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005602 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006200 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007105 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007347 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008207 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006641 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003467 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003433 yhhU CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004468 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008374 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004619 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007844 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004648 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113885 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085665 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101094 acpT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005640 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005065 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005169 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003791 yhhU CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009266 acpT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003423 acpT CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004110 yhhU CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075572 yhhU CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089726 yhhU CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003692 yhhU CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004048 acpT CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3703737 to 3714324
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003230zntACDSforward37022193704417Upstream
AEC-0003231sirACDScomplement37045193704764Upstream
AEC-0003232yhhQCDSforward37049853705650Upstream
AEC-0003233dcrBCDSforward37057233706280Upstream
AEC-0003234yhhSCDScomplement37062843707501Upstream
AEC-0003235yhhTCDSforward37076333708682Upstream
AEC-0003236acpTCDSforward37087373709324Matches
AEC-0003237nikACDSforward37094353711009Downstream
AEC-0003238nikBCDSforward37110093711953Downstream
AEC-0003239nikCCDSforward37119503712783Downstream
AEC-0003240nikDCDSforward37127833713547Downstream
AEC-0003241nikECDSforward37135443714350Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948