Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003256 (yhiP) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003256 showshow history
Names
yhiP ECDH10B_3672
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3736630 3738099 1470 490
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005279 (IPR005279 Dipeptide/tripeptide permease) Jul 2009
Automated Process Approved IPR000109 (IPR000109 Proton-dependent oligopeptide transporter family) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yhiP Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011417
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3672 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005279 Dipeptide/tripeptide permease Protein Sequence Similarity - InterPro Domain: IPR005279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000109 Proton-dependent oligopeptide transporter family Protein Sequence Similarity - InterPro Domain: IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011417 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011417
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002826 dtpB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002994 dtpB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001306 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004825 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003624 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007590 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003551 yhiP CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005574 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006526 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005369 YhiP CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080471 dtpB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006811 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005243 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0003972 yhiP CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008411 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004797 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008178 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006692 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006237 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005186 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009677 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005270 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007491 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005273 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005339 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005180 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005069 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005667 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028546 yhiP CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005468 dtpB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008384 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011417 dtpB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003874 yhiP CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003832 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003782 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134440 yhiP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002720 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004024 yhiP CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0007962 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004239 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004116 yhiP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008213 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011210 yhiP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011748 yhiP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005284 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008263 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005612 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006190 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006815 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007357 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008217 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006631 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003482 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003448 yhiP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008384 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004609 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007854 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004658 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113855 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085650 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101125 yhiP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005630 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005054 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005179 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003815 yhiP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009245 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003371 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004039 yhiP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004066 yhiP CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006898 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002647 dtpB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000236 dtpB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3731630 to 3743099
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003251yhiMCDSforward37306093731661Upstream
AEC-0003252yhiNCDScomplement37319763733178Upstream
AEC-0003253pitACDSforward37334103734909Upstream
AEC-0003254uspBCDScomplement37351533735488Upstream
AEC-0003255uspACDSforward37358793736313Upstream
AEC-0003256yhiPCDSforward37366303738099Matches
AEC-0003257yhiQCDScomplement37381483738900Downstream
AEC-0003258prlCCDScomplement37389083740950Downstream
AEC-0003259yhiRCDSforward37411533741995Downstream
AEC-0003260gorCDSforward37420673743419Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948