Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003298 (dppF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003298 showshow history
Names
dppF ECDH10B_3719
Product
dipeptide transporter; ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3797632 3798636 1005 335
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Jul 2009
Automated Process Approved IPR010066 (IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dppF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011564
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3719 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dipeptide transporter; ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011564 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011564
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001326 dppF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001437 dppF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017600 dppF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003504 dppF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001245 dppF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004768 dppF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003679 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007537 dppF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003602 dppF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005522 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008313 dppF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005315 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080531 dppF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006866 dppF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005187 dppF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004031 dppF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008465 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004858 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008239 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006754 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006301 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005125 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009742 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005207 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007554 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005338 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005403 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005244 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005133 dppF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005731 dppF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028603 dppF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005411 oppF_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008428 dppF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011564 dppF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003827 dppF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003884 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003856 dppF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134492 dppF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002781 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004087 dppF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064728 dppF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002611 dppF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004028 dppF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000770 dppF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008005 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004199 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004157 dppF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008253 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011333 dppF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011631 dppF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005244 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008304 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005653 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006149 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006856 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007399 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008257 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006591 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003517 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003482 dppF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004526 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008424 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004569 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007893 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004699 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113778 dppF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085615 dppF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101219 dppF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005591 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005009 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005220 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003861 dppF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009412 dppF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003388 dppF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005172 dppF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075484 dppF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089800 dppF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003767 dppF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004195 dppF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001313 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011764 dppE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001203 dppF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003653 dppF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001745 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242370 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008186 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004564 dppF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007486 dppF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003396 dppF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128765 dppF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005866 dppF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007237 dppF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001399 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006111 dppF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007903 dppF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033624 dppF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006758 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004381 dppF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004026 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006793 dppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008108 dppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003956 dppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004821 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000113 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3792632 to 3803636
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003295bcsFCDSforward37937943793985Downstream
AEC-0003296bcsGCDSforward37939823795661Downstream
AEC-0004017ldrDCDScomplement37957483795855Downstream
AEC-0004283rdlDncRNAforward37959043795967Downstream
AEC-0003297yhjVCDSforward37963313797602Downstream
AEC-0003298dppFCDScomplement37976323798636Matches
AEC-0003299dppDCDScomplement37986333799616Overlaps Upstream
AEC-0003300dppCCDScomplement37996273800529Upstream
AEC-0003301dppBCDScomplement38005393801558Upstream
AEC-0003302dppACDScomplement38018663803473Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948