Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003300 (dppC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003300 showshow history
Names
dppC ECDH10B_3721
Product
dipeptide transporter; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3799627 3800529 903 301
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dppC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011570
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3721 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dipeptide transporter; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011570 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011570
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001248 dppC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001350 dppC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018417 dppC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003506 dppC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001243 dppC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004766 dppC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003681 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007535 dppC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003604 dppC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005520 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008315 dppC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005313 dppC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080533 dppC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006868 dppC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005185 dppC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004033 dppC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008467 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004860 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008241 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006756 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006303 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005123 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009744 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005205 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007556 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005340 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005405 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005246 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005135 dppC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005733 dppC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028605 dppC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005409 dppC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008430 dppC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011570 dppC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003825 dppC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003886 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003858 dppC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134494 dppC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002783 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004089 dppC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064730 dppC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002599 dppC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004030 dppC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000772 dppC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008007 dppC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004197 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004160 dppC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008255 dppC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011343 dppC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011625 dppC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005242 dppC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008306 dppC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005655 dppC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006147 dppC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006858 dppC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007401 dppC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008259 dppC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006589 dppC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003519 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003484 dppC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004528 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008426 dppC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004567 dppC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007895 dppC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004701 dppC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113770 dppC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085613 dppC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101225 dppC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005589 dppC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005007 dppC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005222 dppC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003863 dppC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009410 dppC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003390 dppC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005174 dppC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075482 dppC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089802 dppC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004193 dppC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001311 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011772 dppC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001205 dppC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003655 dppC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001747 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242372 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008184 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004566 dppC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007488 dppC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003394 dppC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128773 dppC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005864 dppC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007235 dppC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003577 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006113 dppC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007901 dppC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033622 dppC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006756 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004383 dppC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004028 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006795 dppC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008110 dppC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003958 dppC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004823 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000111 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3794627 to 3805529
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003296bcsGCDSforward37939823795661Downstream
AEC-0004017ldrDCDScomplement37957483795855Downstream
AEC-0004283rdlDncRNAforward37959043795967Downstream
AEC-0003297yhjVCDSforward37963313797602Downstream
AEC-0003298dppFCDScomplement37976323798636Downstream
AEC-0003299dppDCDScomplement37986333799616Downstream
AEC-0003300dppCCDScomplement37996273800529Matches
AEC-0003301dppBCDScomplement38005393801558Upstream
AEC-0003302dppACDScomplement38018663803473Upstream
AEC-0004171proKtRNAcomplement38042163804292Upstream
AEC-0003303eptBCDScomplement38043843806075Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948