Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003301 (dppB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003301 showshow history
Names
dppB ECDH10B_3722
Product
dipeptide transporter; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3800539 3801558 1020 340
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dppB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011572
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3722 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dipeptide transporter; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011572 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011572
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001731 dppB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001559 dppB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018416 dppB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003507 dppB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001242 dppB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004765 dppB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003682 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007534 dppB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003605 dppB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005519 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008316 dppB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005312 DppB CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080534 dppB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006869 dppB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005184 dppB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004034 dppB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008468 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004861 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008242 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006757 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006304 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005122 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009745 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005204 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007557 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005341 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005406 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005247 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005136 dppB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005734 dppB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028606 dppB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005408 dppB_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008431 dppB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011572 dppB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003824 dppB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003887 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003859 dppB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134495 dppB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002784 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004090 dppB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064731 dppB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002595 dppB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004031 dppB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000773 dppB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008008 dppB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004196 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004161 dppB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008256 dppB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011346 dppB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011621 dppB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005241 dppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008307 dppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005656 dppB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006146 dppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006859 dppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007402 dppB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008260 dppB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006588 dppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003520 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003485 dppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004529 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008427 dppB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004566 dppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007896 dppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004702 dppB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113767 dppB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085612 dppB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101228 dppB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005588 dppB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005006 dppB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005223 dppB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003864 dppB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009409 dppB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003391 dppB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005175 dppB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075481 dppB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089803 dppB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003764 dppB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004192 dppB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001310 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011775 dppB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001206 dppB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003656 dppB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001748 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242378 dppB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004567 dppB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003393 dppB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128780 dppB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003575 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033620 dppB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004384 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004029 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008111 dppB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003959 dppB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004824 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000110 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3795539 to 3806558
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003296bcsGCDSforward37939823795661Downstream
AEC-0004017ldrDCDScomplement37957483795855Downstream
AEC-0004283rdlDncRNAforward37959043795967Downstream
AEC-0003297yhjVCDSforward37963313797602Downstream
AEC-0003298dppFCDScomplement37976323798636Downstream
AEC-0003299dppDCDScomplement37986333799616Downstream
AEC-0003300dppCCDScomplement37996273800529Downstream
AEC-0003301dppBCDScomplement38005393801558Matches
AEC-0003302dppACDScomplement38018663803473Upstream
AEC-0004171proKtRNAcomplement38042163804292Upstream
AEC-0003303eptBCDScomplement38043843806075Upstream
AEC-0003304yhjXCDScomplement38063993807607Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948