Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003302 (dppA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003302 showshow history
Names
dppA ECDH10B_3723
Product
dipeptide transporter; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3801866 3803473 1608 536
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000914 (IPR000914 Solute-binding protein family 5 domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dppA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011576
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3723 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dipeptide transporter; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000914 Solute-binding protein family 5 domain Protein Sequence Similarity - InterPro Domain: IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011576 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011576
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000914
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000092 dppA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000066 dppA CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001240 dppA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004763 dppA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003684 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007532 dppA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003606 dppA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005517 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008318 dppA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005310 dppA pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080537 dppA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006871 dppA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005183 dppA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004035 dppA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008470 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004863 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008244 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006759 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006306 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005120 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009747 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005202 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007559 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005343 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005408 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005249 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005138 dppA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005736 dppA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028607 dppA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005406 dppA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008433 dppA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011576 dppA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003823 dppA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003888 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003861 dppA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134496 dppA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002786 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004091 dppA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004032 dppA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008009 dppA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004195 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004163 dppA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008257 dppA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011350 dppA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005240 dppA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008308 dppA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005657 dppA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006145 dppA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006860 dppA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007403 dppA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008261 dppA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006587 dppA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003521 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003486 dppA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004531 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008428 dppA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004565 dppA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007897 dppA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004703 dppA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113764 dppA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085611 dppA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101231 dppA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005587 dppA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005005 dppA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005224 dppA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003392 dppA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005176 dppA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075479 dppA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089804 dppA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003763 dppA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004191 dppA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001309 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011779 dppA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001207 dppA_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003976 dppA_1 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001749 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242384 dppA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008182 dppA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004568 dppA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007490 dppA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003392 dppA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128788 dppA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005862 dppA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007233 dppA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003574 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006115 dppA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007899 dppA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033619 dppA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006754 dppA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004385 dppA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004030 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006797 dppA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008112 dppA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003960 dppA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004825 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000108 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3796866 to 3808473
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003297yhjVCDSforward37963313797602Downstream
AEC-0003298dppFCDScomplement37976323798636Downstream
AEC-0003299dppDCDScomplement37986333799616Downstream
AEC-0003300dppCCDScomplement37996273800529Downstream
AEC-0003301dppBCDScomplement38005393801558Downstream
AEC-0003302dppACDScomplement38018663803473Matches
AEC-0004171proKtRNAcomplement38042163804292Upstream
AEC-0003303eptBCDScomplement38043843806075Upstream
AEC-0003304yhjXCDScomplement38063993807607Upstream
AEC-0003305yhjYCDScomplement38078363808534Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948