Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003308 (bisC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003308 showshow history
Names
bisC ECDH10B_3730
Product
biotin sulfoxide reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3809661 3811994 2334 778

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Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Jul 2009
Automated Process Approved IPR006658 (IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase) Jul 2009
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Jul 2009
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Jul 2009
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bisC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011597
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3730 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product biotin sulfoxide reductase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Protein Sequence Similarity - InterPro Domain: IPR006658
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011597 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011597
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Uncurated comment The coordinates of bisC have been changed from those reported in the GenBank entry (GBAN:CP000948.1) to correspond to the start site predicted by a published sequence analysis, adding 18 codons to the N-terminus. Published Sequence Analysis - PubMed ID: 15601707
Reference: Escherichia coli K-12 MG1655 		Sep 2009
Gene Ontology
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009010
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000020 torZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000023 torZ CDS
Ortholog
Person Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003693 CDS
Person Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007523 bisC CDS
Person Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003613 bisC CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0005507 CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080546 bisC CDS
Person Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008479 bisC CDS
Person Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028621 bisC CDS
Person Uncurated Go view Escherichia coli HS ADR-0008441 bisC CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0011597 bisC CDS
Person Uncurated Go view Escherichia coli K-12 W3110 ADY-0003816 bisC CDS
Person Uncurated Go view Escherichia coli SE11 AFS-0003896 CDS
Person Uncurated Go view Escherichia coli SMS-3-5 AFT-0003869 bisC CDS
Person Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134509 CDS
Person Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004100 bisC CDS
Person Uncurated Go view Salmonella Agona SL483 BBX-0008025 CDS
Person Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004188 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004181 CDS
Person Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008274 CDS
Person Uncurated Go view Salmonella Enteritidis P125109 BCF-0011398 bisC CDS
Person Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011574 bisC CDS
Person Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005223 CDS
Person Uncurated Go view Salmonella Heidelberg SL476 BBV-0008324 CDS
Person Uncurated Go view Salmonella Heidelberg SL486 BBW-0005673 CDS
Person Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006134 CDS
Person Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006877 CDS
Person Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007421 CDS
Person Uncurated Go view Salmonella Newport SL254 BBQ-0008278 CDS
Person Uncurated Go view Salmonella Newport SL317 BBR-0006571 CDS
Person Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003531 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003495 bisC CDS
Person Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004547 CDS
Person Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008445 CDS
Person Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004547 CDS
Person Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007908 CDS
Person Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004714 CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0113739 bisC CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0085601 bisC CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101271 bisC CDS
Person Uncurated Go view Salmonella Virchow SL491 BBS-0005571 CDS
Person Uncurated Go view Salmonella Weltevreden SL484 BBU-0004994 CDS
Person Uncurated Go view Salmonella enterica CVM23701 BBL-0005241 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0003876 bisC CDS
Person Uncurated Go view Shigella boydii BS512 ADJ-0009396 bisC CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0004918 bisC pseudogene
Person Uncurated Go view Shigella flexneri 2457T ABQ-0075471 bisC CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0089811 bisC CDS
Person Uncurated Go view Shigella flexneri 8401 BAG-0003756 bisC CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0004184 bisC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3804661 to 3816994
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003303eptBCDScomplement38043843806075Downstream
AEC-0003304yhjXCDScomplement38063993807607Downstream
AEC-0003305yhjYCDScomplement38078363808534Downstream
AEC-0003306tagCDSforward38086923809255Downstream
AEC-0003307yiaCCDSforward38092523809692Overlaps Downstream
AEC-0003308bisCCDScomplement38096613811994Matches
AEC-0003309yiaDCDSforward38121473812806Upstream
AEC-0003310tiaECDSforward38129103813884Upstream
AEC-0003311yiaFCDScomplement38139343814644Upstream
AEC-0003312yiaGCDSforward38150783815368Upstream
AEC-0003313cspACDSforward38156493815861Upstream
AEC-0004018hokACDScomplement38160483816200Upstream
AEC-0004545mokApseudogenecomplement38160483816232Upstream
AEC-0000052IS150.2repeat_regionforward38162333817675Upstream
AEC-0003314insJCDSforward38162803816801Upstream
AEC-0003315insKCDSforward38167983817649Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948