Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003316 (glyS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003316 showshow history
Names
glyS ECDH10B_3739
Product
glycine tRNA synthetase, beta subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3817928 3819997 2070 690
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006194 (IPR006194 Glycine-tRNA synthetase, heterodimeric) Jul 2009
Automated Process Approved IPR002311 (IPR002311 (DEPRECATED) Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal) Jul 2009
Automated Process Approved IPR008909 (IPR008909 DALR anticodon binding) Jul 2009
Automated Process Approved IPR015944 (IPR015944 Glycine-tRNA ligase, beta subunit) Jul 2009
Automated Process Approved IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding) Jul 2009
Automated Process Approved IPR009007 (IPR009007 (DEPRECATED) Peptidase aspartic, catalytic) Jul 2009
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009007
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009080
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006426 glycyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009080
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004190 aspartic-type endopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009007
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004820 glycine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glyS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011624
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3739 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glycine tRNA synthetase, beta subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR015944 Glycine-tRNA ligase, beta subunit Protein Sequence Similarity - InterPro Domain: IPR015944
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008909 DALR anticodon binding Protein Sequence Similarity - InterPro Domain: IPR008909
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006194 Glycine-tRNA synthetase, heterodimeric Protein Sequence Similarity - InterPro Domain: IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002311 (DEPRECATED) Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal Protein Sequence Similarity - InterPro Domain: IPR002311
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR009080
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR009007 (DEPRECATED) Peptidase aspartic, catalytic Protein Sequence Similarity - InterPro Domain: IPR009007
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011624 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011624
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006426 glycyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006420 arginyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009007
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009080
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004190 aspartic-type endopeptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009007
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004820 glycine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006194
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004814 arginine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008909
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009080
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000133 glyS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000143 glyS CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016141 glyS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003522 glyS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001433 glyS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004745 glyS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003700 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007513 glyS CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003619 glyS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005497 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006962 glyS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005294 glyS pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080555 glyS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006886 glyS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005161 glyS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004054 glyS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008487 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008265 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006780 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006327 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005099 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009768 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005181 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007580 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005365 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005430 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005272 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005159 glyS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005758 glyS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028628 glyS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005390 glyS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008450 glyS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011624 glyS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003807 glyS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003904 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003878 glyS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134515 glyS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002806 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004108 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060286 glyS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000056 glyS CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001229 glyS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000193 glyS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008035 glyS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004175 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004198 glyS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008284 glyS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011431 glyS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011544 glyS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005211 glyS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008335 glyS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005684 glyS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006120 glyS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006885 glyS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007429 glyS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008286 glyS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006561 glyS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003543 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003505 glyS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004557 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008456 glyS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004536 glyS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007918 glyS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004724 glyS CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113709 glyS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085590 glyS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101300 glyS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005558 glyS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004986 glyS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005252 glyS CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003889 glyS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009387 glyS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003409 glyS CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004911 glyS CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075451 glyS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089827 glyS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004233 glyS CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004174 glyS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000211 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011965 glyS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002387 glyS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002096 glyS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003548 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243854 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007905 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003606 glyS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007225 glyS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003340 glyS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129047 glyS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005789 glyS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006391 glyS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002997 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006185 glyS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006671 glyS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033889 glyS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006683 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004469 glyS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000027 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004939 glyS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008169 glyS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004036 glyS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004917 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000027 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3812928 to 3824997
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003310tiaECDSforward38129103813884Downstream
AEC-0003311yiaFCDScomplement38139343814644Downstream
AEC-0003312yiaGCDSforward38150783815368Downstream
AEC-0003313cspACDSforward38156493815861Downstream
AEC-0004018hokACDScomplement38160483816200Downstream
AEC-0004545mokApseudogenecomplement38160483816232Downstream
AEC-0000052IS150.2repeat_regionforward38162333817675Downstream
AEC-0003314insJCDSforward38162803816801Downstream
AEC-0003315insKCDSforward38167983817649Downstream
AEC-0004544sokAncRNAforward38176773817705Downstream
AEC-0003316glySCDScomplement38179283819997Matches
AEC-0004094ysaBCDScomplement38210133821312Upstream
AEC-0003317yiaHCDSforward38214873822482Upstream
AEC-0003318yiaACDScomplement38225243822961Upstream
AEC-0003319yiaBCDScomplement38230073823348Upstream
AEC-0003320xylBCDScomplement38235173824971Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948