Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003321 (xylA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003321 showshow history
Names
xylA ECDH10B_3746
Product
D-xylose isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3825043 3826365 1323 441
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012307 (IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain) Jul 2009
Automated Process Approved IPR013022 (IPR013022 Xylose isomerase-like, TIM barrel domain) Jul 2009
Automated Process Approved IPR013452 (IPR013452 Xylose isomerase, bacterial-type) Jul 2009
Automated Process Approved IPR001998 (IPR001998 Xylose isomerase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001998
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name xylA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011639
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3746 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-xylose isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013452 Xylose isomerase, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR013452
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001998 Xylose isomerase Protein Sequence Similarity - InterPro Domain: IPR001998
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013022 Xylose isomerase-like, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR013022
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR012307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011639 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011639
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001998
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002065 xylA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002085 xylA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016103 xylA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004738 xylA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003707 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007506 xylA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003626 xylA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005488 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006969 xylA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005287 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080562 xylA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006893 xylA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005154 xylA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004061 xylA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008494 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004890 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008272 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006787 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006334 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005092 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009775 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005174 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007587 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005372 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005437 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005279 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005166 xylA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005765 xylA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028635 xylA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005383 xylA_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008457 xylA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011639 xylA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003800 xylA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003911 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003885 xylA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134521 xylA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002813 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004115 xylA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060298 xylA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004165 xylA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000030 xylA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000206 xylA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008042 xylA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004168 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004204 xylA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008291 xylA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011453 xylA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011523 xylA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005204 xylA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008342 xylA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005691 xylA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006114 xylA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006891 xylA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007435 xylA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008294 xylA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006553 xylA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003511 xylA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004566 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008464 xylA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004528 xylA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007925 xylA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004731 xylA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113690 xylA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085584 xylA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101318 xylA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005550 xylA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004979 xylA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005258 xylA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003900 xylA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009380 xylA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003169 xylA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004162 xylA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000166 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011886 xylA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002363 xylA_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002641 xylA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000686 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242485 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0008288 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004921 xylA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007261 xylA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003363 xylA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128937 xylA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005825 xylA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007198 xylA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003745 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006150 xylA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006935 xylA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033856 xylA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006718 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004428 xylA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004541 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007869 xylA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008141 xylA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004011 xylA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004884 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000069 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3820043 to 3831365
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004094ysaBCDScomplement38210133821312Downstream
AEC-0003317yiaHCDSforward38214873822482Downstream
AEC-0003318yiaACDScomplement38225243822961Downstream
AEC-0003319yiaBCDScomplement38230073823348Downstream
AEC-0003320xylBCDScomplement38235173824971Downstream
AEC-0003321xylACDScomplement38250433826365Matches
AEC-0003322xylFCDSforward38267313827723Upstream
AEC-0003323xylGCDSforward38278013829342Upstream
AEC-0003324xylHCDSforward38293203830501Upstream
AEC-0003325xylRCDSforward38305793831757Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948