Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003322 (xylF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003322 showshow history
Names
xylF ECDH10B_3747
Product
D-xylose transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3826731 3827723 993 331
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001761 (IPR001761 Periplasmic binding protein/LacI sugar binding domain) Jul 2009
Automated Process Approved IPR013456 (IPR013456 D-xylose ABC transporter, substrate-binding protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name xylF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011646
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3747 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-xylose transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001761 Periplasmic binding protein/LacI sugar binding domain Protein Sequence Similarity - InterPro Domain: IPR001761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013456 D-xylose ABC transporter, substrate-binding protein Protein Sequence Similarity - InterPro Domain: IPR013456
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011646 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011646
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002605 xylF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002568 xylF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016101 xylF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004737 xylF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003708 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007505 xylF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003627 xylF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005486 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006970 xylF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005286 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080563 xylF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006894 xylF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005153 xylF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004062 xylF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008495 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004891 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008273 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006788 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006335 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005091 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009776 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005173 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007588 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005373 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005438 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005280 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005167 xylF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005766 xylF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028636 xylF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005382 xylF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008458 xylF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011646 xylF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003799 xylF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003913 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003886 xylF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134522 xylF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002814 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004116 xylF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060299 xylF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000064 xylF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001236 xylF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000207 xylF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003901 xylF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009377 xylF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003168 xylF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075444 xylF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256132 xylF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004225 xylF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000165 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011883 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002362 xylF_1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002642 xylF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000687 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0242484 xylF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004919 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007262 xylF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003364 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128935 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005826 xylF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007199 xylF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002045 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006149 xylF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006934 xylF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033855 xylF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006719 xylF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004426 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004539 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007868 xylF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008140 xylF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004010 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004882 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000070 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3821731 to 3832723
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003317yiaHCDSforward38214873822482Upstream
AEC-0003318yiaACDScomplement38225243822961Upstream
AEC-0003319yiaBCDScomplement38230073823348Upstream
AEC-0003320xylBCDScomplement38235173824971Upstream
AEC-0003321xylACDScomplement38250433826365Upstream
AEC-0003322xylFCDSforward38267313827723Matches
AEC-0003323xylGCDSforward38278013829342Downstream
AEC-0003324xylHCDSforward38293203830501Downstream
AEC-0003325xylRCDSforward38305793831757Downstream
AEC-0003326baxCDScomplement38319533832777Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948