Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003327 (malS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003327 showshow history
Names
malS ECDH10B_3752
Product
alpha-amylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3833097 3835127 2031 677
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006589 (IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain) Jul 2009
Automated Process Approved IPR006047 (IPR006047 Glycosyl hydrolase, family 13, catalytic domain) Jul 2009
Automated Process Approved IPR014635 (IPR014635 Alpha-amylase, MalS type) Jul 2009
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Jul 2009
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name malS Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011668
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3752 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alpha-amylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006589 (DEPRECATED) Glycosyl hydrolase, family 13, subfamily, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014635 Alpha-amylase, MalS type Protein Sequence Similarity - InterPro Domain: IPR014635
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006047 Glycosyl hydrolase, family 13, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006047
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011668 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011668
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006589
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002279 malS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002440 malS CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004732 malS CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003714 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007500 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003632 malS CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005479 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006976 malS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005281 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080569 malS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006900 malS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005147 malS CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004067 malS CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008500 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004897 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008278 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006793 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006340 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005085 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009781 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005168 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007593 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005378 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005443 malS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005285 malS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005172 malS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005771 malS CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028641 malS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005377 malS CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008463 malS CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011668 malS CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003794 malS CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003919 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003891 malS CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134527 malS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002820 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004122 malS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008045 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008295 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011463 malS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005200 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008345 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005694 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006895 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007440 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008297 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006549 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003552 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003514 malS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004572 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008469 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004523 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007930 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004736 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113681 malS CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085581 malS CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101334 malS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005547 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004973 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005263 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003906 malS CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009372 malS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003157 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075438 malS CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089838 malS CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004220 malS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000202 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011994 malS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002397 malS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002086 malS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003558 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243868 malS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007913 malS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003597 malS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007217 malS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003333 malS CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0129067 malS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005781 malS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006384 malS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002990 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006193 malS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006663 malS CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033897 malS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006675 malS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004477 malS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000018 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004946 malS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008177 malS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004029 malS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004907 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000018 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3828097 to 3840127
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003323xylGCDSforward38278013829342Upstream
AEC-0003324xylHCDSforward38293203830501Upstream
AEC-0003325xylRCDSforward38305793831757Upstream
AEC-0003326baxCDScomplement38319533832777Upstream
AEC-0003327malSCDSforward38330973835127Matches
AEC-0003328avtACDSforward38353053836558Downstream
AEC-0003329ysaACDScomplement38367093837182Downstream
AEC-0003330yiaJCDScomplement38372843838132Downstream
AEC-0003331yiaKCDSforward38383333839331Downstream
AEC-0003332yiaLCDSforward38393433839810Downstream
AEC-0003333yiaMCDSforward38399283840401Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948