Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003331 (yiaK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003331 showshow history
Names
yiaK ECDH10B_3756
Product
2,3-diketo-L-gulonate dehydrogenase, NADH-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3838333 3839331 999 333
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003767 (IPR003767 Malate/L-lactate dehydrogenase-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yiaK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011682
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3756 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003767 Malate/L-lactate dehydrogenase-like Protein Sequence Similarity - InterPro Domain: IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011682 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011682
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003398 yiaK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003347 yiaK CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001444 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004728 dlgD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003718 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007496 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003636 yiaK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005475 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006980 dlgD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005277 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080573 yiaK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006904 dlgD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005143 dlgD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004071 yiaK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008504 dlgD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005373 dlgD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008468 dlgD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011682 yiaK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003790 yiaK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003923 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003895 dlgD CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004126 yiaK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003142 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002299 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008049 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008300 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011474 yiaK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011505 yiaK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005196 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008349 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005698 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006104 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006899 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007444 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008301 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006544 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003556 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003518 yiaK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004578 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008473 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004519 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007934 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004740 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113671 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085577 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101344 yiaK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005543 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004969 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005267 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003910 yiaK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009368 dlgD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003153 dlgD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075433 yiaK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089842 yiaK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004216 yiaK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000186 dlgD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3833333 to 3844331
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003327malSCDSforward38330973835127Upstream
AEC-0003328avtACDSforward38353053836558Upstream
AEC-0003329ysaACDScomplement38367093837182Upstream
AEC-0003330yiaJCDScomplement38372843838132Upstream
AEC-0003331yiaKCDSforward38383333839331Matches
AEC-0003332yiaLCDSforward38393433839810Downstream
AEC-0003333yiaMCDSforward38399283840401Downstream
AEC-0003334yiaNCDSforward38404043841681Downstream
AEC-0003335yiaOCDSforward38416943842680Downstream
AEC-0003336lyxKCDSforward38426843844180Downstream
AEC-0003337sgbHCDSforward38441773844839Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948