Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003334 (yiaN) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003334 showshow history
Names
yiaN ECDH10B_3759
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3840404 3841681 1278 426
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010656 (IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit) Jul 2009
Automated Process Approved IPR004681 (IPR004681 TRAP transporter large membrane protein DctM) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004681
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yiaN Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011692
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3759 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004681 TRAP transporter large membrane protein DctM Protein Sequence Similarity - InterPro Domain: IPR004681
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Protein Sequence Similarity - InterPro Domain: IPR010656
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011692 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011692
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004681
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003672 yiaN CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004308 yiaN CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001448 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004725 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003722 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007493 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003639 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005471 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006983 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005274 DctM CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080577 yiaN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006907 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005140 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004075 yiaN CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008507 CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005369 siaM CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008471 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011692 yiaN CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003787 yiaN CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003926 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003898 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004130 yiaN CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060573 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000233 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000122 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001919 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008053 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008304 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011483 yiaN CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011494 yiaN CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005192 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008353 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005702 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006100 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006903 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007448 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008305 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006540 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003560 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003522 yiaN CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004582 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008477 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004515 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007938 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004744 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113661 yiaN CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085573 yiaN CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101356 yiaN CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005539 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004965 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005271 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009365 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003150 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075427 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256134 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004211 yiaN CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007612 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003618 siaT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002999 siaT CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237773 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005801 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001062 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005712 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001859 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120551 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008266 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004336 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000779 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009639 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008527 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032317 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007720 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002888 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001673 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006532 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006382 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001677 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002041 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002961 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3835404 to 3846681
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003328avtACDSforward38353053836558Upstream
AEC-0003329ysaACDScomplement38367093837182Upstream
AEC-0003330yiaJCDScomplement38372843838132Upstream
AEC-0003331yiaKCDSforward38383333839331Upstream
AEC-0003332yiaLCDSforward38393433839810Upstream
AEC-0003333yiaMCDSforward38399283840401Upstream
AEC-0003334yiaNCDSforward38404043841681Matches
AEC-0003335yiaOCDSforward38416943842680Downstream
AEC-0003336lyxKCDSforward38426843844180Downstream
AEC-0003337sgbHCDSforward38441773844839Downstream
AEC-0003338sgbUCDSforward38448323845692Downstream
AEC-0003339sgbECDSforward38456863846381Downstream
AEC-0004539ysaCpseudogenecomplement38464133846516Downstream
AEC-0004540ysaDpseudogeneforward38465173846694Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948