Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003335 (yiaO) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003335 showshow history
Names
yiaO ECDH10B_3760
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3841694 3842680 987 329
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004682 (IPR004682 TRAP transporter solute receptor, DctP family) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yiaO Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011694
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3760 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004682 TRAP transporter solute receptor, DctP family Protein Sequence Similarity - InterPro Domain: IPR004682
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011694 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011694
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003818 yiaO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004315 yiaO CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001449 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004724 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003723 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003640 yiaO CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005469 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006984 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005273 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080579 yiaO CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006908 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005139 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004076 yiaO CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008508 yiaO CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005368 yiaO CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008472 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011694 yiaO CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003786 yiaO CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003927 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003899 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004132 yiaO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008054 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008305 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011487 yiaO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011491 yiaO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005191 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008354 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005703 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006099 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006904 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007449 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008306 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006539 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003561 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003523 yiaO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004583 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008478 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004514 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007939 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004745 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101359 yiaO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005538 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004964 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005272 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004210 yiaO CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3836694 to 3847680
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003329ysaACDScomplement38367093837182Upstream
AEC-0003330yiaJCDScomplement38372843838132Upstream
AEC-0003331yiaKCDSforward38383333839331Upstream
AEC-0003332yiaLCDSforward38393433839810Upstream
AEC-0003333yiaMCDSforward38399283840401Upstream
AEC-0003334yiaNCDSforward38404043841681Upstream
AEC-0003335yiaOCDSforward38416943842680Matches
AEC-0003336lyxKCDSforward38426843844180Downstream
AEC-0003337sgbHCDSforward38441773844839Downstream
AEC-0003338sgbUCDSforward38448323845692Downstream
AEC-0003339sgbECDSforward38456863846381Downstream
AEC-0004539ysaCpseudogenecomplement38464133846516Downstream
AEC-0004540ysaDpseudogeneforward38465173846694Downstream
AEC-0003340yiaTCDScomplement38467283847468Downstream
AEC-0003341yiaUCDSforward38475923848566Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948