Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003336 (lyxK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003336 showshow history
Names
lyxK ECDH10B_3761
Product
L-xylulose kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3842684 3844180 1497 499
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000577 (IPR000577 Carbohydrate kinase, FGGY) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lyxK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011696
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3761 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-xylulose kinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000577 Carbohydrate kinase, FGGY Protein Sequence Similarity - InterPro Domain: IPR000577
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011696 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011696
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002636 lyxK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002562 lyxK CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001450 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004723 lyx CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003724 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007490 lyx CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003641 lyxK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005468 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006986 lyx CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005272 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080580 lyxK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006909 lyx CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005138 lyx CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004077 lyx CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008509 lyx CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005367 lyx CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008473 lyx CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011696 lyxK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003785 lyxK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003928 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003900 lyx CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004133 lyxK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002302 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008055 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008306 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011490 lyxK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005190 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008355 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005704 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006098 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006905 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007450 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008307 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006538 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003562 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003524 lyxK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004584 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004513 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007940 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004746 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113650 lyxK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085571 lyxK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101362 lyxK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005537 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004963 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005273 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003148 lyx CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004209 lyxK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000185 lyx_2 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234994 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005038 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003369 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007122 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004017 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126566 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006476 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005966 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001564 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005948 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004302 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030492 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007411 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000922 lyxK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003620 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004798 lyxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007285 lyxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000839 lyxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000978 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004042 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3837684 to 3849180
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003330yiaJCDScomplement38372843838132Upstream
AEC-0003331yiaKCDSforward38383333839331Upstream
AEC-0003332yiaLCDSforward38393433839810Upstream
AEC-0003333yiaMCDSforward38399283840401Upstream
AEC-0003334yiaNCDSforward38404043841681Upstream
AEC-0003335yiaOCDSforward38416943842680Upstream
AEC-0003336lyxKCDSforward38426843844180Matches
AEC-0003337sgbHCDSforward38441773844839Overlaps Downstream
AEC-0003338sgbUCDSforward38448323845692Downstream
AEC-0003339sgbECDSforward38456863846381Downstream
AEC-0004539ysaCpseudogenecomplement38464133846516Downstream
AEC-0004540ysaDpseudogeneforward38465173846694Downstream
AEC-0003340yiaTCDScomplement38467283847468Downstream
AEC-0003341yiaUCDSforward38475923848566Downstream
AEC-0003342yiaVCDScomplement38485633849699Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948