Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003364 (grxC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003364 showshow history
Names
grxC ECDH10B_3792
Product
glutaredoxin 3
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3879791 3880042 252 84
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002109 (IPR002109 Glutaredoxin) Jul 2009
Automated Process Approved IPR011767 (IPR011767 Glutaredoxin active site) Jul 2009
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Jul 2009
Automated Process Approved IPR011900 (IPR011900 Glutaredoxin, GrxC) Jul 2009
Automated Process Approved IPR014025 (IPR014025 Glutaredoxin subgroup) Jul 2009
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name grxC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011801
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3792 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product glutaredoxin 3 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011900 Glutaredoxin, GrxC Protein Sequence Similarity - InterPro Domain: IPR011900
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014025 Glutaredoxin subgroup Protein Sequence Similarity - InterPro Domain: IPR014025
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011767 Glutaredoxin active site Protein Sequence Similarity - InterPro Domain: IPR011767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002109 Glutaredoxin Protein Sequence Similarity - InterPro Domain: IPR002109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011801 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011801
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001884 grxC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002063 grxC CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000094 grxC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001483 grxC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004687 grxC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003750 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007456 grxC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005377 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005429 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007023 grxC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008516 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080610 grxC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006947 grxC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010065 grxC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004103 grxC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008546 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004937 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008314 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006828 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006378 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005047 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009817 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005130 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007629 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005415 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005481 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005323 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005209 grxC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005808 grxC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028681 grxC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005340 grxC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008510 grxC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011801 grxC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003754 grxC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003964 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003944 grxC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134562 grxC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002860 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004161 grxC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008087 grxC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004130 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004240 grxC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008335 grxC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011606 grxC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011377 grxC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005160 grxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008385 grxC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005734 grxC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006069 grxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006935 grxC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007480 grxC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008337 grxC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006509 grxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003590 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003553 grxC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004618 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008508 grxC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004484 grxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007969 grxC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004776 grxC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113576 grxC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085543 grxC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101456 grxC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005506 grxC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004934 grxC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008384 grxC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003947 grxC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009458 grxC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003187 grxC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004559 grxC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075396 grxC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089871 grxC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004169 grxC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004136 grxC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001336 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000239 grxC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003174 grxC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002782 grxC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001721 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234383 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004175 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004147 grxC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007781 grxC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003224 grxC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115535 grxC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007915 grxC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006256 grxC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001766 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005479 grxC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007973 grxC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029661 grxC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005074 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004547 grxC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004612 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004367 grxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004004 grxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000069 grxC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000071 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004914 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3874791 to 3885042
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003358lldRCDSforward38746543875430Downstream
AEC-0003359lldDCDSforward38754273876617Downstream
AEC-0003360yibKCDSforward38768153877288Downstream
AEC-0003361cysECDScomplement38773413878162Downstream
AEC-0003362gpsACDScomplement38782423879261Downstream
AEC-0003363secBCDScomplement38792613879728Downstream
AEC-0003364grxCCDScomplement38797913880042Matches
AEC-0003365yibNCDScomplement38801843880615Upstream
AEC-0003366gpmICDSforward38808603882404Upstream
AEC-0003367envCCDSforward38824383883697Upstream
AEC-0003368yibQCDSforward38837013884660Upstream
AEC-0003369yibDCDScomplement38846473885681Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948