Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003366 (gpmI) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003366 showshow history
Names
gpmI ECDH10B_3794
Product
phosphoglycero mutase III, cofactor-independent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3880860 3882404 1545 515
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011258 (IPR011258 BPG-independent PGAM, N-terminal) Jul 2009
Automated Process Approved IPR006124 (IPR006124 Metalloenzyme) Jul 2009
Automated Process Approved IPR005995 (IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent) Jul 2009
Automated Process Approved IPR017849 (IPR017849 (DEPRECATED) Alkaline phosphatase-like, alpha/beta/alpha) Jul 2009
Automated Process Approved IPR017850 (IPR017850 Alkaline-phosphatase-like, core domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006007 glucose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004619 phosphoglycerate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name gpmI Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011818
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3794 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoglycero mutase III, cofactor-independent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011258 BPG-independent PGAM, N-terminal Protein Sequence Similarity - InterPro Domain: IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006124 Metalloenzyme Protein Sequence Similarity - InterPro Domain: IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent Protein Sequence Similarity - InterPro Domain: IPR005995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017850 Alkaline-phosphatase-like, core domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017850
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017849 (DEPRECATED) Alkaline phosphatase-like, alpha/beta/alpha Protein Sequence Similarity - InterPro Domain: IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011818 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011818
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006007 glucose catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004619 phosphoglycerate mutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030145 manganese ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011258
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006124
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002196 gpmM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002331 gpmM CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001485 gpmI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004685 gpmI CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003752 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007454 gpmI CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003669 yibO CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005427 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007025 gpmI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008518 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080615 gpmI CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006949 gpmI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010067 gpmI CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004105 gpmM CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008548 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004941 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008316 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006830 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006380 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005045 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009819 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005128 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007631 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005417 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005483 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005325 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005211 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005810 gpmI CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028683 gpmI CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005338 gpmI CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008512 gpmI CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011818 gpmM CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003752 gpmI CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003967 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003946 gpmI CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134564 gpmI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002864 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004166 yibO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008089 gpmI CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004128 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004242 pmgI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008337 gpmI CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011612 pmgI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011371 pmgI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005158 gpmI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008387 gpmI CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005736 gpmI CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006067 gpmI CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006938 gpmI CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007483 gpmI CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008339 gpmI CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006507 gpmI CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003592 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003555 pmgI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004620 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008510 gpmI CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004482 gpmI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007971 gpmI CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004778 gpmI CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113572 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085541 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101461 pmgI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005504 gpmI CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004932 gpmI CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008386 gpmI CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003949 gpmI CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009460 gpmI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003189 gpmI CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004561 yibO CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075393 yibO CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089873 yibO CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004164 yibO CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004134 gpmI CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001334 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000234 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003172 gpmI CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002780 gpmI CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001724 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234378 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004173 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004149 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007783 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003226 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115530 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007917 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006258 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005481 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007971 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029663 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005076 gpmI CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004549 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004614 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008864 gpmI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004002 gpmI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000067 gpmI CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000069 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004916 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3875860 to 3887404
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003359lldDCDSforward38754273876617Upstream
AEC-0003360yibKCDSforward38768153877288Upstream
AEC-0003361cysECDScomplement38773413878162Upstream
AEC-0003362gpsACDScomplement38782423879261Upstream
AEC-0003363secBCDScomplement38792613879728Upstream
AEC-0003364grxCCDScomplement38797913880042Upstream
AEC-0003365yibNCDScomplement38801843880615Upstream
AEC-0003366gpmICDSforward38808603882404Matches
AEC-0003367envCCDSforward38824383883697Downstream
AEC-0003368yibQCDSforward38837013884660Downstream
AEC-0003369yibDCDScomplement38846473885681Downstream
AEC-0003370tdhCDScomplement38859203886945Downstream
AEC-0003371kblCDScomplement38869553888151Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948