Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003374 (rfaF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003374 showshow history
Names
rfaF ECDH10B_3802
Product
ADP-heptose:LPS heptosyltransferase II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3890529 3891575 1047 349
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002201 (IPR002201 Glycosyl transferase, family 9) Jul 2009
Automated Process Approved IPR011910 (IPR011910 ADP-heptose--LPS heptosyltransferase 2) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfaF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011845
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3802 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ADP-heptose:LPS heptosyltransferase II Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002201 Glycosyl transferase, family 9 Protein Sequence Similarity - InterPro Domain: IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011910 ADP-heptose--LPS heptosyltransferase 2 Protein Sequence Similarity - InterPro Domain: IPR011910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011845 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011845
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000787 rfaF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000581 rfaF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017697 rfaF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000089 waaF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001550 rfaF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004678 rfaF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003759 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007447 rfaF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003676 rfaF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005418 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007033 rfaF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008097 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080623 rfaF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006957 rfaF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010075 rfaF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004112 rfaF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008555 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005547 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008324 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006838 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006388 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009827 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005120 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007640 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005425 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005491 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005333 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005219 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005818 rfaF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028691 rfaF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005331 rfaF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008519 rfaF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011845 waaF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003744 rfaF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003975 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003954 rfaF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134572 rfaF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002873 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004174 rfaF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060366 rfaF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000085 waaF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003444 waaF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003019 rfaF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008096 rfaF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004121 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004249 rfaF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008344 rfaF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011635 rfaF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011350 rfaF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005151 rfaF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008394 rfaF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005743 rfaF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006060 rfaF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006945 rfaF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007490 rfaF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008346 rfaF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006500 rfaF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003599 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003562 rfaF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004627 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008517 rfaF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004475 rfaF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007978 rfaF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004785 rfaF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113558 rfaF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085534 rfaF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101484 rfaF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005497 rfaF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004925 rfaF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008393 rfaF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003956 rfaF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009467 rfaF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003200 rfaF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004568 rfaF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075383 rfaF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089882 rfaF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004154 waaF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004125 rfaF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001328 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000219 rfaF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003759 rfaF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003846 rfaF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001730 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234370 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004167 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004157 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007789 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003231 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115517 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007923 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006264 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001163 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005487 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007965 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029670 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005082 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004557 rfaF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004622 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008422 rfaF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003996 rfaF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000061 rfaF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000062 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004923 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3885529 to 3896575
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003369yibDCDScomplement38846473885681Upstream
AEC-0003370tdhCDScomplement38859203886945Upstream
AEC-0003371kblCDScomplement38869553888151Upstream
AEC-0003372htrLCDScomplement38884263889283Upstream
AEC-0003373rfaDCDSforward38895873890519Upstream
AEC-0003374rfaFCDSforward38905293891575Matches
AEC-0003375rfaCCDSforward38915793892538Downstream
AEC-0003376rfaLCDSforward38925483893807Downstream
AEC-0003377rfaKCDScomplement38938393894912Downstream
AEC-0003378rfaZCDScomplement38949453895796Downstream
AEC-0003379rfaYCDScomplement38958673896565Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948