Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003375 (rfaC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003375 showshow history
Names
rfaC ECDH10B_3803
Product
ADP-heptose:LPS heptosyl transferase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3891579 3892538 960 320
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002201 (IPR002201 Glycosyl transferase, family 9) Jul 2009
Automated Process Approved IPR011908 (IPR011908 Lipopolysaccharide heptosyltransferase I) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfaC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011847
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3803 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ADP-heptose:LPS heptosyl transferase I Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002201 Glycosyl transferase, family 9 Protein Sequence Similarity - InterPro Domain: IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011908 Lipopolysaccharide heptosyltransferase I Protein Sequence Similarity - InterPro Domain: IPR011908
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011847 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011847
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009103 lipopolysaccharide biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011908
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001220 rfaC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000963 rfaC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017696 rfaC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000088 waaC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001549 rfaC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0004677 rfaC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0003760 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007446 rfaC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003677 rfaC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005417 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007034 rfaC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008098 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080624 rfaC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010076 rfaC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004113 rfaC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008556 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005548 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008325 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006839 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009828 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005119 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007641 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005426 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005492 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005334 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005220 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005819 rfaC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028692 rfaC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005330 rfaC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008520 rfaC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011847 waaC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003743 rfaC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003976 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0003955 rfaC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134573 rfaC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002874 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004175 rfaC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060365 rfaC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000086 waaC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003443 waaC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003018 rfaC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008097 rfaC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0004120 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004250 rfaC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008345 rfaC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0011637 rfaC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0011347 rfaC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005150 rfaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008395 rfaC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005744 rfaC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006059 rfaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006946 rfaC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007491 rfaC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008347 rfaC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006499 rfaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003600 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003563 rfaC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004628 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008518 rfaC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0004474 rfaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007979 rfaC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004786 rfaC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0113556 rfaC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085533 rfaC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0101487 rfaC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005496 rfaC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004924 rfaC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008394 rfaC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003957 rfaC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009468 rfaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003201 rfaC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004569 rfaC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075382 rfaC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089883 rfaC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004153 waaC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004124 rfaC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001327 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000217 rfa-2 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003758 rfaC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003845 rfaC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001731 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234369 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004166 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004158 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007790 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003232 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115515 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007924 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006265 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001162 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005488 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007964 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029671 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005083 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004558 rfaC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004623 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008421 rfaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0003995 rfaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000060 rfaC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000061 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004924 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3886579 to 3897538
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003370tdhCDScomplement38859203886945Upstream
AEC-0003371kblCDScomplement38869553888151Upstream
AEC-0003372htrLCDScomplement38884263889283Upstream
AEC-0003373rfaDCDSforward38895873890519Upstream
AEC-0003374rfaFCDSforward38905293891575Upstream
AEC-0003375rfaCCDSforward38915793892538Matches
AEC-0003376rfaLCDSforward38925483893807Downstream
AEC-0003377rfaKCDScomplement38938393894912Downstream
AEC-0003378rfaZCDScomplement38949453895796Downstream
AEC-0003379rfaYCDScomplement38958673896565Downstream
AEC-0003380rfaJCDScomplement38965833897599Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948