Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003377 (rfaK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003377 showshow history
Names
rfaK ECDH10B_3805
Product
lipopolysaccharide core biosynthesis
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3893839 3894912 1074 358
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002201 (IPR002201 Glycosyl transferase, family 9) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfaK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011851
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3805 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lipopolysaccharide core biosynthesis Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002201 Glycosyl transferase, family 9 Protein Sequence Similarity - InterPro Domain: IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011851 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011851
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002201
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0009481 waaU CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0007918 waaU CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011851 waaU CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003741 waaU CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3888839 to 3899912
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003372htrLCDScomplement38884263889283Downstream
AEC-0003373rfaDCDSforward38895873890519Downstream
AEC-0003374rfaFCDSforward38905293891575Downstream
AEC-0003375rfaCCDSforward38915793892538Downstream
AEC-0003376rfaLCDSforward38925483893807Downstream
AEC-0003377rfaKCDScomplement38938393894912Matches
AEC-0003378rfaZCDScomplement38949453895796Upstream
AEC-0003379rfaYCDScomplement38958673896565Upstream
AEC-0003380rfaJCDScomplement38965833897599Upstream
AEC-0003381rfaICDScomplement38976393898658Upstream
AEC-0003382rfaBCDScomplement38986583899737Upstream
AEC-0003383rfaSCDScomplement38997813900716Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948