Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003382 (rfaB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003382 showshow history
Names
rfaB ECDH10B_3810
Product
UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 3898658 3899737 1080 360

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Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001296 (IPR001296 Glycosyl transferase, family 1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rfaB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011862
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3810 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001296 Glycosyl transferase, family 1 Protein Sequence Similarity - InterPro Domain: IPR001296
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0011862 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0011862
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Uncurated comment The coordinates of rfaB have been changed from those reported in the GenBank entry (GBAN:CP000948.1) to correspond to the start site predicted in Escherichia coli K-12 MG1655 (ASAP:ABE-0011862), removing 10 codons from the N-terminus. Unpublished Sequence Analysis - Author Name, Email; Comment: Eric Neeno-Eckwall, ecneenoeckwa@wisc.edu Sep 2008
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001296
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004618 rfaB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004755 waaB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001542 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004120 rfaB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0011862 waaB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003736 rfaB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3893658 to 3904737
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003376rfaLCDSforward38925483893807Downstream
AEC-0003377rfaKCDScomplement38938393894912Downstream
AEC-0003378rfaZCDScomplement38949453895796Downstream
AEC-0003379rfaYCDScomplement38958673896565Downstream
AEC-0003380rfaJCDScomplement38965833897599Downstream
AEC-0003381rfaICDScomplement38976393898658Overlaps Downstream
AEC-0003382rfaBCDScomplement38986583899737Matches
AEC-0003383rfaSCDScomplement38997813900716Upstream
AEC-0003384rfaPCDScomplement39007533901550Upstream
AEC-0003385rfaGCDScomplement39015433902667Upstream
AEC-0003386rfaQCDScomplement39026643903698Upstream
AEC-0003387kdtACDSforward39041403905417Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948